A way of looking at COVID-19 data that I haven't seen before.

Overview

Visualizing Omicron: COVID-19 Deaths vs. Cases

Click here for other countries.

Data is from Our World in Data/Johns Hopkins University.

About this project

For most of the COVID-19 pandemic, the daily focus has been on the number of cases. This still seems to be true as the omicron wave hits.

But omicron on the whole has been much milder. For those who have been recently doubly or triple vaccinated and/or recently infected and are free from underlying comorbidities (of which the list is long), the risk of death is very small. The primary risk of this phase of the pandemic is of those not in the above groups getting sick all at once, overwhelming available hospital beds, while the healthcare workforce is itself depleted as workers quarantine or are at home suffering (usually mild) symptoms.

Here we explore an interesting way to visualize differences in the various waves of the pandemic: plotting deaths as a function of cases.

It suggests that omicron is indeed quite different.

The notebook shows plots for many countries. The main function should be self-contained enough for you to copy and paste and use to plot data for any country you like.

The data is from https://github.com/owid/covid-19-data, specifically from JHU (public > data > jhu). The usual caveats apply, including completeness from some countries and deaths with vs. of COVID-19 (incidental vs. causative).

Please use as you see fit, as long as it's with attribution.

Ramy Arnaout, MD, DPhil / Boston, MA / January 8, 2022

Matplotlib colormaps from the yt project !

cmyt Matplotlib colormaps from the yt project ! Colormaps overview The following colormaps, as well as their respective reversed (*_r) versions are av

The yt project 5 Sep 16, 2022
An open-source tool for visual and modular block programing in python

PyFlow PyFlow is an open-source tool for modular visual programing in python ! Although for now the tool is in Beta and features are coming in bit by

1.1k Jan 06, 2023
Simple Python interface for Graphviz

Simple Python interface for Graphviz

Sebastian Bank 1.3k Dec 26, 2022
These data visualizations were created for my introductory computer science course using Python

Homework 2: Matplotlib and Data Visualization Overview These data visualizations were created for my introductory computer science course using Python

Sophia Huang 12 Oct 20, 2022
eoplatform is a Python package that aims to simplify Remote Sensing Earth Observation by providing actionable information on a wide swath of RS platforms and provide a simple API for downloading and visualizing RS imagery

An Earth Observation Platform Earth Observation made easy. Report Bug | Request Feature About eoplatform is a Python package that aims to simplify Rem

Matthew Tralka 4 Aug 11, 2022
The Python ensemble sampling toolkit for affine-invariant MCMC

emcee The Python ensemble sampling toolkit for affine-invariant MCMC emcee is a stable, well tested Python implementation of the affine-invariant ense

Dan Foreman-Mackey 1.3k Jan 04, 2023
An interactive dashboard built with python that enables you to visualise how rent prices differ across Sweden.

sweden-rent-dashboard An interactive dashboard built with python that enables you to visualise how rent prices differ across Sweden. The dashboard/web

Rory Crean 5 Dec 19, 2021
Area-weighted venn-diagrams for Python/matplotlib

Venn diagram plotting routines for Python/Matplotlib Routines for plotting area-weighted two- and three-circle venn diagrams. Installation The simples

Konstantin Tretyakov 400 Dec 31, 2022
Mattia Ficarelli 2 Mar 29, 2022
Implement the Perspective open source code in preparation for data visualization

Task Overview | Installation Instructions | Link to Module 2 Introduction Experience Technology at JP Morgan Chase Try out what real work is like in t

Abdulazeez Jimoh 1 Jan 23, 2022
Rubrix is a free and open-source tool for exploring and iterating on data for artificial intelligence projects.

Open-source tool for exploring, labeling, and monitoring data for AI projects

Recognai 1.5k Jan 07, 2023
High-level geospatial data visualization library for Python.

geoplot: geospatial data visualization geoplot is a high-level Python geospatial plotting library. It's an extension to cartopy and matplotlib which m

Aleksey Bilogur 1k Jan 01, 2023
Smoking Simulation is an app to simulate the spreading of smokers and non-smokers, their interactions and population during certain amount of time.

Smoking Simulation is an app to simulate the spreading of smokers and non-smokers, their interactions and population during certain

Bohdan Ruban 5 Nov 08, 2022
Automatically generate GitHub activity!

Commit Bot Automatically generate GitHub activity! We've all wanted to be the developer that commits every day, but that requires a lot of work. Let's

Ricky 4 Jun 07, 2022
Active Transport Analytics Model (ATAM) is a new strategic transport modelling and data visualization framework for Active Transport as well as emerging micro-mobility modes

{ATAM} Active Transport Analytics Model Active Transport Analytics Model (“ATAM”) is a new strategic transport modelling and data visualization framew

Peter Stephan 0 Jan 12, 2022
Movie recommendation using RASA, TigerGraph

Demo run: The below video will highlight the runtime of this setup and some sample real-time conversations using the power of RASA + TigerGraph, Steps

Sudha Vijayakumar 3 Sep 10, 2022
Function Plotter: a simple application with GUI to plot mathematical functions

Function-Plotter Function Plotter is a simple application with GUI to plot mathe

Mohamed Nabawe 4 Jan 03, 2022
NumPy and Pandas interface to Big Data

Blaze translates a subset of modified NumPy and Pandas-like syntax to databases and other computing systems. Blaze allows Python users a familiar inte

Blaze 3.1k Jan 01, 2023
Visualise Ansible execution time across playbooks, tasks, and hosts.

ansible-trace Visualise where time is spent in your Ansible playbooks: what tasks, and what hosts, so you can find where to optimise and decrease play

Mark Hansen 81 Dec 15, 2022
Massively parallel self-organizing maps: accelerate training on multicore CPUs, GPUs, and clusters

Somoclu Somoclu is a massively parallel implementation of self-organizing maps. It exploits multicore CPUs, it is able to rely on MPI for distributing

Peter Wittek 239 Nov 10, 2022