A tensorflow implementation of an HMM layer

Overview

Build Status

tensorflow_hmm

Tensorflow and numpy implementations of the HMM viterbi and forward/backward algorithms.

See Keras example for an example of how to use the Keras HMMLayer.

See test_hmm.py for usage examples. Here is an excerpt of the documentation from hmm.py for reference for now.

See also viterbi_wikipedia_example.py which replicates the viterbi example on wikipedia.

class HMM(object):
    """
    A class for Hidden Markov Models.

    The model attributes are:
    - K :: the number of states
    - P :: the K by K transition matrix (from state i to state j,
        (i, j) in [1..K])
    - p0 :: the initial distribution (defaults to starting in state 0)
    """

    def __init__(self, P, p0=None):

class HMMTensorflow(HMM):
      def forward_backward(self, y):
          """
          runs forward backward algorithm on state probabilities y
      
          Arguments
          ---------
          y : np.array : shape (T, K) where T is number of timesteps and
              K is the number of states
      
          Returns
          -------
          (posterior, forward, backward)
          posterior : list of length T of tensorflow graph nodes representing
              the posterior probability of each state at each time step
          forward : list of length T of tensorflow graph nodes representing
              the forward probability of each state at each time step
          backward : list of length T of tensorflow graph nodes representing
              the backward probability of each state at each time step
          """
      
      
      def viterbi_decode(self, y, nT):
          """
          Runs viterbi decode on state probabilies y.
      
          Arguments
          ---------
          y : np.array : shape (T, K) where T is number of timesteps and
              K is the number of states
          nT : int : number of timesteps in y
      
          Returns
          -------
          (s, pathScores)
          s : list of length T of tensorflow ints : represents the most likely
              state at each time step.
          pathScores : list of length T of tensorflow tensor of length K
              each value at (t, k) is the log likliehood score in state k at
              time t.  sum(pathScores[t, :]) will not necessary == 1
          """
Owner
Zach Dwiel
Zach Dwiel
GestureSSD CBAM - A gesture recognition web system based on SSD and CBAM, using pytorch, flask and node.js

GestureSSD_CBAM A gesture recognition web system based on SSD and CBAM, using pytorch, flask and node.js SSD implementation is based on https://github

xue_senhua1999 2 Jan 06, 2022
Garbage classification using structure data.

垃圾分类模型使用说明 1.包含以下数据文件 文件 描述 data/MaterialMapping.csv 物体以及其归类的信息 data/TestRecords 光谱原始测试数据 CSV 文件 data/TestRecordDesc.zip CSV 文件描述文件 data/Boundaries.cs

wenqi 1 Dec 10, 2021
Pneumonia Detection using machine learning - with PyTorch

Pneumonia Detection Pneumonia Detection using machine learning. Training was done in colab: DEMO: Result (Confusion Matrix): Data I uploaded my datase

Wilhelm Berghammer 12 Jul 07, 2022
Files for a tutorial to train SegNet for road scenes using the CamVid dataset

SegNet and Bayesian SegNet Tutorial This repository contains all the files for you to complete the 'Getting Started with SegNet' and the 'Bayesian Seg

Alex Kendall 800 Dec 31, 2022
Minimal implementation and experiments of "No-Transaction Band Network: A Neural Network Architecture for Efficient Deep Hedging".

No-Transaction Band Network: A Neural Network Architecture for Efficient Deep Hedging Minimal implementation and experiments of "No-Transaction Band N

19 Jan 03, 2023
Unofficial PyTorch implementation of Fastformer based on paper "Fastformer: Additive Attention Can Be All You Need"."

Fastformer-PyTorch Unofficial PyTorch implementation of Fastformer based on paper Fastformer: Additive Attention Can Be All You Need. Usage : import t

Hong-Jia Chen 126 Dec 06, 2022
Variational autoencoder for anime face reconstruction

VAE animeface Variational autoencoder for anime face reconstruction Introduction This repository is an exploratory example to train a variational auto

Minzhe Zhang 2 Dec 11, 2021
The implementation of "Shuffle Transformer: Rethinking Spatial Shuffle for Vision Transformer"

Shuffle Transformer The implementation of "Shuffle Transformer: Rethinking Spatial Shuffle for Vision Transformer" Introduction Very recently, window-

87 Nov 29, 2022
The open source code of SA-UNet: Spatial Attention U-Net for Retinal Vessel Segmentation.

SA-UNet: Spatial Attention U-Net for Retinal Vessel Segmentation(ICPR 2020) Overview This code is for the paper: Spatial Attention U-Net for Retinal V

Changlu Guo 151 Dec 28, 2022
Natural Intelligence is still a pretty good idea.

Human Learn Machine Learning models should play by the rules, literally. Project Goal Back in the old days, it was common to write rule-based systems.

vincent d warmerdam 641 Dec 26, 2022
[IEEE TPAMI21] MobileSal: Extremely Efficient RGB-D Salient Object Detection [PyTorch & Jittor]

MobileSal IEEE TPAMI 2021: MobileSal: Extremely Efficient RGB-D Salient Object Detection This repository contains full training & testing code, and pr

Yu-Huan Wu 52 Jan 06, 2023
BYOL for Audio: Self-Supervised Learning for General-Purpose Audio Representation

BYOL for Audio: Self-Supervised Learning for General-Purpose Audio Representation This is a demo implementation of BYOL for Audio (BYOL-A), a self-sup

NTT Communication Science Laboratories 160 Jan 04, 2023
This game was designed to encourage young people not to gamble on lotteries, as the probablity of correctly guessing the number is infinitesimal!

Lottery Simulator 2022 for Web Launch Application Developed by John Seong in Ontario. This game was designed to encourage young people not to gamble o

John Seong 2 Sep 02, 2022
Implementation of Bagging and AdaBoost Algorithm

Bagging-and-AdaBoost Implementation of Bagging and AdaBoost Algorithm Dataset Red Wine Quality Data Sets For simplicity, we will have 2 classes of win

Zechen Ma 1 Nov 01, 2021
Code basis for the paper "Camera Condition Monitoring and Readjustment by means of Noise and Blur" (2021)

Camera Condition Monitoring and Readjustment by means of Noise and Blur This repository contains the source code of the paper: Wischow, M., Gallego, G

7 Dec 22, 2022
Localized representation learning from Vision and Text (LoVT)

Localized Vision-Text Pre-Training Contrastive learning has proven effective for pre- training image models on unlabeled data and achieved great resul

Philip Müller 10 Dec 07, 2022
Theory-inspired Parameter Control Benchmarks for Dynamic Algorithm Configuration

This repo is for the paper: Theory-inspired Parameter Control Benchmarks for Dynamic Algorithm Configuration The DAC environment is based on the Dynam

Carola Doerr 1 Aug 19, 2022
An easy-to-use app to visualise attentions of various VQA models.

Ask Me Anything: A tool for visualising Visual Question Answering (AMA) An easy-to-use app to visualise attentions of various VQA models. Please click

Apoorve 37 Nov 13, 2022
SHRIMP: Sparser Random Feature Models via Iterative Magnitude Pruning

SHRIMP: Sparser Random Feature Models via Iterative Magnitude Pruning This repository is the official implementation of "SHRIMP: Sparser Random Featur

Bobby Shi 0 Dec 16, 2021
Learning from graph data using Keras

Steps to run = Download the cora dataset from this link : https://linqs.soe.ucsc.edu/data unzip the files in the folder input/cora cd code python eda

Mansar Youness 64 Nov 16, 2022