Geometric Algebra package for JAX

Overview

JAXGA - JAX Geometric Algebra

Build status PyPI

GitHub | Docs

JAXGA is a Geometric Algebra package on top of JAX. It can handle high dimensional algebras by storing only the non-zero basis blade coefficients. It makes use of JAX's just-in-time (JIT) compilation by first precomputing blade indices and signs and then JITting the function doing the actual calculations.

Installation

Install using pip: pip install jaxga

Requirements:

Usage

Unlike most other Geometric Algebra packages, it is not necessary to pre-specify an algebra. JAXGA can either be used with the MultiVector class or by using lower-level functions which is useful for example when using JAX's jit or automatic differentaition.

The MultiVector class provides operator overloading and is constructed with an array of values and their corresponding basis blades. The basis blades are encoded as tuples, for example the multivector 2 e_1 + 4 e_23 would have the values [2, 4] and the basis blade tuple ((1,), (2, 3)).

MultiVector example

import jax.numpy as jnp
from jaxga.mv import MultiVector

a = MultiVector(
    values=2 * jnp.ones([1], dtype=jnp.float32),
    indices=((1,),)
)
# Alternative: 2 * MultiVector.e(1)

b = MultiVector(
    values=4 * jnp.ones([2], dtype=jnp.float32),
    indices=((2, 3),)
)
# Alternative: 4 * MultiVector.e(2, 3)

c = a * b
print(c)

Output: Multivector(8.0 e_{1, 2, 3})

The lower-level functions also deal with values and blades. Functions are provided that take the blades and return a function that does the actual calculation. The returned function is JITted and can also be automatically differentiated with JAX. Furthermore, some operations like the geometric product take a signature function that takes a basis vector index and returns their square.

Lower-level function example

import jax.numpy as jnp
from jaxga.signatures import positive_signature
from jaxga.ops.multiply import get_mv_multiply

a_values = 2 * jnp.ones([1], dtype=jnp.float32)
a_indices = ((1,),)

b_values = 4 * jnp.ones([1], dtype=jnp.float32)
b_indices = ((2, 3),)

mv_multiply, c_indices = get_mv_multiply(a_indices, b_indices, positive_signature)
c_values = mv_multiply(a_values, b_values)
print("C indices:", c_indices, "C values:", c_values)

Output: C indices: ((1, 2, 3),) C values: [8.]

Some notes

  • Both the MultiVector and lower-level function approaches support batches: the axes after the first one (which indexes the basis blades) are treated as batch indices.
  • The MultiVector class can also take a signature in its constructor (default is square to 1 for all basis vectors). Doing operations with MultiVectors with different signatures is undefined.
  • The jaxga.signatures submodule contains a few predefined signature functions.
  • get_mv_multiply and similar functions cache their result by their inputs.
  • The flaxmodules submodule provides flax (a popular neural network library for jax) modules with Geometric Algebra operations.
  • Because we don't deal with a specific algebra, the dual needs an input that specifies the dimensionality of the space in which we want to find the dual element.

Benchmarks

N-d vector * N-d vector, batch size 100, N=range(1, 10), CPU

JaxGA stores only the non-zero basis blade coefficients. TFGA and Clifford on the other hand store all GA elements as full multivectors including all zeros. As a result, JaxGA does better than these for high dimensional algebras.

Below is a benchmark of the geometric product of two vectors with increasing dimensionality from 1 to 9. 100 vectors are multiplied at a time.

JAXGA (CPU) tfga (CPU) clifford
benchmark-results benchmark-results benchmark-results

N-d vector * N-d vector, batch size 100, N=range(1, 50, 5), CPU

Below is a benchmark for higher dimensions that TFGA and Clifford could not handle. Note that the X axis isn't sorted naturally.

benchmark-results

Owner
Robin Kahlow
Software / Machine Learning Engineer
Robin Kahlow
Leveraging OpenAI's Codex to solve cornerstone problems in Music

Music-Codex Leveraging OpenAI's Codex to solve cornerstone problems in Music Please NOTE: Presented generated samples were created by OpenAI's Codex P

Alex 2 Mar 11, 2022
Image transformations designed for Scene Text Recognition (STR) data augmentation. Published at ICCV 2021 Workshop on Interactive Labeling and Data Augmentation for Vision.

Data Augmentation for Scene Text Recognition (ICCV 2021 Workshop) (Pronounced as "strog") Paper Arxiv Why it matters? Scene Text Recognition (STR) req

Rowel Atienza 152 Dec 28, 2022
TSP: Temporally-Sensitive Pretraining of Video Encoders for Localization Tasks

TSP: Temporally-Sensitive Pretraining of Video Encoders for Localization Tasks [Paper] [Project Website] This repository holds the source code, pretra

Humam Alwassel 83 Dec 21, 2022
This repository contains a CBIR system that uses swin transformer to extract image's feature.

Swin-transformer based CBIR This repository contains a CBIR(content-based image retrieval) system. Here we use Swin-transformer to extract query image

JsHou 12 Nov 17, 2022
Monk is a low code Deep Learning tool and a unified wrapper for Computer Vision.

Monk - A computer vision toolkit for everyone Why use Monk Issue: Want to begin learning computer vision Solution: Start with Monk's hands-on study ro

Tessellate Imaging 507 Dec 04, 2022
This repository contains implementations and illustrative code to accompany DeepMind publications

DeepMind Research This repository contains implementations and illustrative code to accompany DeepMind publications. Along with publishing papers to a

DeepMind 11.3k Dec 31, 2022
交互式标注软件,暂定名 iann

iann 交互式标注软件,暂定名iann。 安装 按照官网介绍安装paddle。 安装其他依赖 pip install -r requirements.txt 运行 git clone https://github.com/PaddleCV-SIG/iann/ cd iann python iann

294 Dec 30, 2022
A curated list and survey of awesome Vision Transformers.

English | 简体中文 A curated list and survey of awesome Vision Transformers. You can use mind mapping software to open the mind mapping source file. You c

OpenMMLab 281 Dec 21, 2022
Datasets for new state-of-the-art challenge in disentanglement learning

High resolution disentanglement datasets This repository contains the Falcor3D and Isaac3D datasets, which present a state-of-the-art challenge for co

NVIDIA Research Projects 37 May 26, 2022
[ICCV'21] Learning Conditional Knowledge Distillation for Degraded-Reference Image Quality Assessment

CKDN The official implementation of the ICCV2021 paper "Learning Conditional Knowledge Distillation for Degraded-Reference Image Quality Assessment" O

Multimedia Research 50 Dec 13, 2022
Dense Passage Retriever - is a set of tools and models for open domain Q&A task.

Dense Passage Retrieval Dense Passage Retrieval (DPR) - is a set of tools and models for state-of-the-art open-domain Q&A research. It is based on the

Meta Research 1.1k Jan 03, 2023
Large-scale Hyperspectral Image Clustering Using Contrastive Learning, CIKM 21 Workshop

Spectral-spatial contrastive clustering (SSCC) Yaoming Cai, Yan Liu, Zijia Zhang, Zhihua Cai, and Xiaobo Liu, Large-scale Hyperspectral Image Clusteri

Yaoming Cai 4 Nov 02, 2022
Proposed n-stage Latent Dirichlet Allocation method - A Novel Approach for LDA

n-stage Latent Dirichlet Allocation (n-LDA) Proposed n-LDA & A Novel Approach for classical LDA Latent Dirichlet Allocation (LDA) is a generative prob

Anıl Güven 4 Mar 07, 2022
[ICCV 2021 Oral] Mining Latent Classes for Few-shot Segmentation

Mining Latent Classes for Few-shot Segmentation Lihe Yang, Wei Zhuo, Lei Qi, Yinghuan Shi, Yang Gao. This codebase contains baseline of our paper Mini

Lihe Yang 66 Nov 29, 2022
Pytorch Lightning code guideline for conferences

Deep learning project seed Use this seed to start new deep learning / ML projects. Built in setup.py Built in requirements Examples with MNIST Badges

Pytorch Lightning 1k Jan 02, 2023
An image classification app boilerplate to serve your deep learning models asap!

Image 🖼 Classification App Boilerplate Have you been puzzled by tons of videos, blogs and other resources on the internet and don't know where and ho

Smaranjit Ghose 27 Oct 06, 2022
SAPIEN Manipulation Skill Benchmark

ManiSkill Benchmark SAPIEN Manipulation Skill Benchmark (abbreviated as ManiSkill, pronounced as "Many Skill") is a large-scale learning-from-demonstr

Hao Su's Lab, UCSD 107 Jan 08, 2023
A PaddlePaddle implementation of STGCN with a few modifications in the model architecture in order to forecast traffic jam.

About This repository contains the code of a PaddlePaddle implementation of STGCN based on the paper Spatio-Temporal Graph Convolutional Networks: A D

Tianjian Li 1 Jan 11, 2022
Codes for "CSDI: Conditional Score-based Diffusion Models for Probabilistic Time Series Imputation"

CSDI This is the github repository for the NeurIPS 2021 paper "CSDI: Conditional Score-based Diffusion Models for Probabilistic Time Series Imputation

106 Jan 04, 2023
A Python implementation of active inference for Markov Decision Processes

A Python package for simulating Active Inference agents in Markov Decision Process environments. Please see our companion preprint on arxiv for an ove

235 Dec 21, 2022