An interactive GUI for WhiteboxTools in a Jupyter-based environment

Related tags

Data Visualizationpythongeospatialwhiteboxjupyter-notebookgisremote-sensinglidarhydrologygeoprocessinggeomorphologygeomorphometrywhitebox-tools
Overview

whiteboxgui

image image image image image image image

An interactive GUI for WhiteboxTools in a Jupyter-based environment

Description

The whiteboxgui Python package is a Jupyter frontend for WhiteboxTools, an advanced geospatial data analysis platform developed by Prof. John Lindsay (webpage; jblindsay) at the University of Guelph's Geomorphometry and Hydrogeomatics Research Group. WhiteboxTools can be used to perform common geographical information systems (GIS) analysis operations, such as cost-distance analysis, distance buffering, and raster reclassification. Remote sensing and image processing tasks include image enhancement (e.g. panchromatic sharpening, contrast adjustments), image mosaicing, numerous filtering operations, simple classification (k-means), and common image transformations. WhiteboxTools also contains advanced tooling for spatial hydrological analysis (e.g. flow-accumulation, watershed delineation, stream network analysis, sink removal), terrain analysis (e.g. common terrain indices such as slope, curvatures, wetness index, hillshading; hypsometric analysis; multi-scale topographic position analysis), and LiDAR data processing. LiDAR point clouds can be interrogated (LidarInfo, LidarHistogram), segmented, tiled and joined, analyized for outliers, interpolated to rasters (DEMs, intensity images), and ground-points can be classified or filtered. WhiteboxTools is not a cartographic or spatial data visualization package; instead it is meant to serve as an analytical backend for other data visualization software, mainly GIS.

The WhiteboxTools currently contains 447 tools, which are each grouped based on their main function into one of the following categories: Data Tools, GIS Analysis, Hydrological Analysis, Image Analysis, LiDAR Analysis, Mathematical and Statistical Analysis, Stream Network Analysis, and Terrain Analysis. For a listing of available tools, complete with documentation and usage details, please see the WhiteboxTools User Manual.

Installation

whiteboxgui is available on PyPI. To install whiteboxgui, run this command in your terminal:

pip install whiteboxgui

whiteboxgui is also available on conda-forge. If you have Anaconda or Miniconda installed on your computer, you can create a conda Python environment to install whiteboxgui:

conda create -n wbt python
conda activate wbt
conda install mamba -c conda-forge
mamba install whiteboxgui -c conda-forge

Usage

The whiteboxgui provides a Graphical User Interface (GUI) for WhiteboxTools in a Jupyter-based environment, which can be invoked using the following Python script. You can also try image

import whiteboxgui
whiteboxgui.show(tree=True)

Imgur

Demo

tutorial

Credits

This package was created with Cookiecutter and the giswqs/pypackage project template.

You might also like...
A Jupyter - Three.js bridge
A Jupyter - Three.js bridge

pythreejs A Python / ThreeJS bridge utilizing the Jupyter widget infrastructure. Getting Started Installation Using pip: pip install pythreejs And the

Jupyter Widgets 700 Feb 17, 2021
IPython/Jupyter notebook module for Vega and Vega-Lite
IPython/Jupyter notebook module for Vega and Vega-Lite

IPython Vega IPython/Jupyter notebook module for Vega 5, and Vega-Lite 4. Notebooks with embedded visualizations can be viewed on GitHub and nbviewer.

Vega 294 Feb 12, 2021
Drag’n’drop Pivot Tables and Charts for Jupyter/IPython Notebook, care of PivotTable.js

pivottablejs: the Python module Drag’n’drop Pivot Tables and Charts for Jupyter/IPython Notebook, care of PivotTable.js Installation pip install pivot

Nicolas Kruchten 419 Feb 11, 2021
Render Jupyter notebook in the terminal
Render Jupyter notebook in the terminal

jut - JUpyter notebook Terminal viewer. The command line tool view the IPython/Jupyter notebook in the terminal. Install pip install jut Usage $jut --

Kracekumar 169 Dec 27, 2022
A Jupyter - Leaflet.js bridge
A Jupyter - Leaflet.js bridge

ipyleaflet A Jupyter / Leaflet bridge enabling interactive maps in the Jupyter notebook. Usage Selecting a basemap for a leaflet map: Loading a geojso

Jupyter Widgets 1.3k Dec 27, 2022
Draw datasets from within Jupyter.
Draw datasets from within Jupyter.

drawdata This small python app allows you to draw a dataset in a jupyter notebook. This should be very useful when teaching machine learning algorithm

vincent d warmerdam 505 Nov 27, 2022
High performance, editable, stylable datagrids in jupyter and jupyterlab
High performance, editable, stylable datagrids in jupyter and jupyterlab

An ipywidgets wrapper of regular-table for Jupyter. Examples Two Billion Rows Notebook Click Events Notebook Edit Events Notebook Styling Notebook Pan

J.P. Morgan Chase 75 Dec 15, 2022
ipyvizzu - Jupyter notebook integration of Vizzu
ipyvizzu - Jupyter notebook integration of Vizzu

ipyvizzu - Jupyter notebook integration of Vizzu. Tutorial · Examples · Repository About The Project ipyvizzu is the Jupyter Notebook integration of V

Vizzu 729 Jan 8, 2023
Interactive Data Visualization in the browser, from Python
Interactive Data Visualization in the browser, from Python

Bokeh is an interactive visualization library for modern web browsers. It provides elegant, concise construction of versatile graphics, and affords hi

Bokeh 17.1k Dec 31, 2022
Comments
  • Error code : 101 on Whitebox gui

    Error code : 101 on Whitebox gui

    Environment Information

    • whiteboxgui version:
    • Python version: 3.10
    • Operating System: MacOs

    Description

    Hello,

    I am currently trying to use the withebox LIDAR tools on my mac via the Gui (same error with Qgis), but i have a consistant error code, the 101 code.

    What I Did

    I am using Lidar data from the French national geographic institut, the file is under the .laz extension. I tried three different tools in withebox (lidarinfo, ClipLidarToPolygon, ClassifyBuldingLidar) and the same error code appears. The wired thing is that i downloaded a different set of lidar data from the same platform i downloaded the previous set and the error did no occur on that set even though i followed the same protocol.

    Does anyone have an idea why this might happen ?

    Error { kind: UnexpectedEof, message: "failed to fill whole buffer" }', /Users/johnlindsay/.cargo/registry/src/github.com-1ecc6299db9ec823/las-0.7.4/src/compression/mod.rs:78:18
note: run with `RUST_BACKTRACE=1` environment variable to display a backtrace
Error code 101
    bug 
    opened by mathiaschabal 2
  • [feature] search tools to match searching texts also with descriptions of a tool in its documentation

    [feature] search tools to match searching texts also with descriptions of a tool in its documentation

    Hello. I notice that the search tools behavior differently between whiteboxgui and the GUI from whitebox.Runner(). It seems that search tools of whiteboxgui only match the title of the tool but not the rich description from its documentation. Is it possible to enhance the search tool of whiteboxgui like that in whitebox.Runner()?

    Pics: whitebox whiteboxgui

    Feature Request 
    opened by CWen001 2
  • CVE-2007-4559 Patch

    CVE-2007-4559 Patch

    Patching CVE-2007-4559

    Hi, we are security researchers from the Advanced Research Center at Trellix. We have began a campaign to patch a widespread bug named CVE-2007-4559. CVE-2007-4559 is a 15 year old bug in the Python tarfile package. By using extract() or extractall() on a tarfile object without sanitizing input, a maliciously crafted .tar file could perform a directory path traversal attack. We found at least one unsantized extractall() in your codebase and are providing a patch for you via pull request. The patch essentially checks to see if all tarfile members will be extracted safely and throws an exception otherwise. We encourage you to use this patch or your own solution to secure against CVE-2007-4559. Further technical information about the vulnerability can be found in this blog.

    If you have further questions you may contact us through this projects lead researcher Kasimir Schulz.

    opened by TrellixVulnTeam 0
  • Add support for selecting multiple files

    Add support for selecting multiple files

    Currently, ipyfilechooser only allows selecting a single file. Some tools requires a file list (i.e., selecting multiple files). One potential workaround I can think of is to use a SelectMultiple widget and push ipyfilechooser.selected to the widget with register_callback. Related issue: https://github.com/crahan/ipyfilechooser/issues/11

    https://ipywidgets.readthedocs.io/en/latest/examples/Widget%20List.html#SelectMultiple image

    Feature Request 
    opened by giswqs 2
Releases(v2.2.0)
Owner
Qiusheng Wu
Assistant Professor of Geography at the University of Tennessee, Knoxville
Qiusheng Wu
GitHub Repository https://whiteboxgui.gishub.org
This is a super simple visualization toolbox (script) for transformer attention visualization ✌

Trans_attention_vis This is a super simple visualization toolbox (script) for transformer attention visualization ✌ 1. How to prepare your attention m

Mingyu Wang 3 Jul 09, 2022
Automatically visualize your pandas dataframe via a single print! 📊 💡

A Python API for Intelligent Visual Discovery Lux is a Python library that facilitate fast and easy data exploration by automating the visualization a

Lux 4.3k Dec 28, 2022
Matplotlib colormaps from the yt project !

cmyt Matplotlib colormaps from the yt project ! Colormaps overview The following colormaps, as well as their respective reversed (*_r) versions are av

The yt project 5 Sep 16, 2022
Python package to visualize and cluster partial dependence.

partial_dependence A python library for plotting partial dependence patterns of machine learning classifiers. The technique is a black box approach to

NYU Visualization Lab 25 Nov 14, 2022
I'm doing Genuary, an aritifiacilly generated month to build code that make beautiful things

Genuary 2022 I'm doing Genuary, an aritifiacilly generated month to build code that make beautiful things. Every day there is a new prompt for making

Joaquín Feltes 1 Jan 10, 2022
A dashboard built using Plotly-Dash for interactive visualization of Dex-connected individuals across the country.

Dashboard For The DexConnect Platform of Dexterity Global Working prototype submission for internship at Dexterity Global Group. Dashboard for real ti

Yashasvi Misra 2 Jun 15, 2021
An open-source plotting library for statistical data.

Lets-Plot Lets-Plot is an open-source plotting library for statistical data. It is implemented using the Kotlin programming language. The design of Le

JetBrains 820 Jan 06, 2023
Squidpy is a tool for the analysis and visualization of spatial molecular data.

Squidpy is a tool for the analysis and visualization of spatial molecular data. It builds on top of scanpy and anndata, from which it inherits modularity and scalability. It provides analysis tools t

Theis Lab 251 Dec 19, 2022
Visualize tensors in a plain Python REPL using Sparklines

Visualize tensors in a plain Python REPL using Sparklines

Shawn Presser 43 Sep 03, 2022
Some method of processing point cloud

Point-Cloud Some method of processing point cloud inversion the completion pointcloud to incomplete point cloud Some model of encoding point cloud to

Tan 1 Nov 19, 2021
Visual Python is a GUI-based Python code generator, developed on the Jupyter Notebook environment as an extension.

Visual Python is a GUI-based Python code generator, developed on the Jupyter Notebook environment as an extension.

Visual Python 564 Jan 03, 2023
Simple function to plot multiple barplots in the same figure.

Simple function to plot multiple barplots in the same figure. Supports padding and custom color.

Matthias Jakobs 2 Feb 21, 2022
Python histogram library - histograms as updateable, fully semantic objects with visualization tools. [P]ython [HYST]ograms.

physt P(i/y)thon h(i/y)stograms. Inspired (and based on) numpy.histogram, but designed for humans(TM) on steroids(TM). The goal is to unify different

Jan Pipek 120 Dec 08, 2022
finds grocery stores and stuff next to route (gpx)

Route-Report Route report is a command-line utility that can be used to locate points-of-interest near your planned route (gpx). The results are based

Clemens Mosig 5 Oct 10, 2022
Make scripted visualizations in blender

Scripted visualizations in blender The goal of this project is to script 3D scientific visualizations using blender. To achieve this, we aim to bring

Praneeth Namburi 10 Jun 01, 2022
Implement the Perspective open source code in preparation for data visualization

Task Overview | Installation Instructions | Link to Module 2 Introduction Experience Technology at JP Morgan Chase Try out what real work is like in t

Abdulazeez Jimoh 1 Jan 23, 2022
PolytopeSampler is a Matlab implementation of constrained Riemannian Hamiltonian Monte Carlo for sampling from high dimensional disributions on polytopes

PolytopeSampler PolytopeSampler is a Matlab implementation of constrained Riemannian Hamiltonian Monte Carlo for sampling from high dimensional disrib

9 Sep 26, 2022
Piglet-shaders - PoC of custom shaders for Piglet

Piglet custom shader PoC This is a PoC for compiling Piglet fragment shaders usi

6 Mar 10, 2022
With Holoviews, your data visualizes itself.

HoloViews Stop plotting your data - annotate your data and let it visualize itself. HoloViews is an open-source Python library designed to make data a

HoloViz 2.3k Jan 04, 2023
An interactive GUI for WhiteboxTools in a Jupyter-based environment

whiteboxgui An interactive GUI for WhiteboxTools in a Jupyter-based environment GitHub repo: https://github.com/giswqs/whiteboxgui Documentation: http

Qiusheng Wu 105 Dec 15, 2022