MISSFormer: An Effective Medical Image Segmentation Transformer

Overview

MISSFormer

Code for paper "MISSFormer: An Effective Medical Image Segmentation Transformer". Please read our preprint at the following link: paper_address.

1. Environment

  • Please prepare an environment with Ubuntu 20.04, with Python 3.6.13, PyTorch 1.8.0, and CUDA 11.1.1.

2. Train/Test

  • Train
python train.py --dataset Synapse --root_path your DATA_DIR --max_epochs 400 --output_dir your OUT_DIR  --img_size 224 --base_lr 0.05 --batch_size 24
  • Test
python test.py --dataset Synapse --is_savenii --volume_path your DATA_DIR --output_dir your OUT_DIR --max_epoch 400 --base_lr 0.05 --img_size 224 --batch_size 24

References

@article{huang2021missformer,
  title={MISSFormer: An Effective Medical Image Segmentation Transformer},
  author={Huang, Xiaohong and Deng, Zhifang and Li, Dandan and Yuan, Xueguang},
  journal={arXiv preprint arXiv:2109.07162},
  year={2021}
}
Owner
Fong
Fong
Arabic Car License Recognition. A solution to the kaggle competition Machathon 3.0.

Transformers Arabic licence plate recognition 🚗 Solution to the kaggle competition Machathon 3.0. Ranked in the top 6️⃣ at the final evaluation phase

Noran Hany 17 Dec 04, 2022
HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.

HTSeq DEVS: https://github.com/htseq/htseq DOCS: https://htseq.readthedocs.io A Python library to facilitate programmatic analysis of data from high-t

HTSeq 57 Dec 20, 2022
A PyTorch-Based Framework for Deep Learning in Computer Vision

TorchCV: A PyTorch-Based Framework for Deep Learning in Computer Vision @misc{you2019torchcv, author = {Ansheng You and Xiangtai Li and Zhen Zhu a

Donny You 2.2k Jan 09, 2023
Code for the paper "Relation of the Relations: A New Formalization of the Relation Extraction Problem"

This repo contains the code for the EMNLP 2020 paper "Relation of the Relations: A New Paradigm of the Relation Extraction Problem" (Jin et al., 2020)

YYY 27 Oct 26, 2022
Conversational text Analysis using various NLP techniques

PyConverse Let me try first Installation pip install pyconverse Usage Please try this notebook that demos the core functionalities: basic usage noteb

Rita Anjana 158 Dec 25, 2022
UmlsBERT: Clinical Domain Knowledge Augmentation of Contextual Embeddings Using the Unified Medical Language System Metathesaurus

UmlsBERT: Clinical Domain Knowledge Augmentation of Contextual Embeddings Using the Unified Medical Language System Metathesaurus General info This is

71 Oct 25, 2022
Public repository of the 3DV 2021 paper "Generative Zero-Shot Learning for Semantic Segmentation of 3D Point Clouds"

Generative Zero-Shot Learning for Semantic Segmentation of 3D Point Clouds Björn Michele1), Alexandre Boulch1), Gilles Puy1), Maxime Bucher1) and Rena

valeo.ai 15 Dec 22, 2022
Implementation of Convolutional LSTM in PyTorch.

ConvLSTM_pytorch This file contains the implementation of Convolutional LSTM in PyTorch made by me and DavideA. We started from this implementation an

Andrea Palazzi 1.3k Dec 29, 2022
AI Based Smart Exam Proctoring Package

AI Based Smart Exam Proctoring Package It takes image (base64) as input: Provide Output as: Detection of Mobile phone. Detection of More than 1 person

NARENDER KESWANI 3 Sep 09, 2022
DALL-Eval: Probing the Reasoning Skills and Social Biases of Text-to-Image Generative Transformers

DALL-Eval: Probing the Reasoning Skills and Social Biases of Text-to-Image Generative Transformers Authors: Jaemin Cho, Abhay Zala, and Mohit Bansal (

Jaemin Cho 98 Dec 15, 2022
Learning cell communication from spatial graphs of cells

ncem Features Repository for the manuscript Fischer, D. S., Schaar, A. C. and Theis, F. Learning cell communication from spatial graphs of cells. 2021

Theis Lab 77 Dec 30, 2022
Virtual Dance Reality Stage is a feature that offers you to share a stage with another user virtually.

Virtual Dance Reality Stage is a feature that offers you to share a stage with another user virtually. It uses the concept of Image Background Removal using DeepLab Architecture (based on Semantic Se

Devashi Choudhary 5 Aug 24, 2022
A comprehensive list of published machine learning applications to cosmology

ml-in-cosmology This github attempts to maintain a comprehensive list of published machine learning applications to cosmology, organized by subject ma

George Stein 290 Dec 29, 2022
Using Streamlit to host a multi-page tool with model specs and classification metrics, while also accepting user input values for prediction.

Predicitng_viability Using Streamlit to host a multi-page tool with model specs and classification metrics, while also accepting user input values for

Gopalika Sharma 1 Nov 08, 2021
Text Summarization - WCN — Weighted Contextual N-gram method for evaluation of Text Summarization

Text Summarization WCN — Weighted Contextual N-gram method for evaluation of Text Summarization In this project, I fine tune T5 model on Extreme Summa

Aditya Shah 1 Jan 03, 2022
TransPrompt - Towards an Automatic Transferable Prompting Framework for Few-shot Text Classification

TransPrompt This code is implement for our EMNLP 2021's paper 《TransPrompt:Towards an Automatic Transferable Prompting Framework for Few-shot Text Cla

WangJianing 23 Dec 21, 2022
Self-Supervised Pre-Training for Transformer-Based Person Re-Identification

Self-Supervised Pre-Training for Transformer-Based Person Re-Identification [pdf] The official repository for Self-Supervised Pre-Training for Transfo

Hao Luo 116 Jan 04, 2023
Algorithmic trading using machine learning.

Algorithmic Trading This machine learning algorithm was built using Python 3 and scikit-learn with a Decision Tree Classifier. The program gathers sto

Sourav Biswas 101 Nov 10, 2022
CSAW-M: An Ordinal Classification Dataset for Benchmarking Mammographic Masking of Cancer

CSAW-M This repository contains code for CSAW-M: An Ordinal Classification Dataset for Benchmarking Mammographic Masking of Cancer. Source code for tr

Yue Liu 7 Oct 11, 2022
Code and models for ICCV2021 paper "Robust Object Detection via Instance-Level Temporal Cycle Confusion".

Robust Object Detection via Instance-Level Temporal Cycle Confusion This repo contains the implementation of the ICCV 2021 paper, Robust Object Detect

Xin Wang 69 Oct 13, 2022