FusionNet: A deep fully residual convolutional neural network for image segmentation in connectomics

Last update: Dec 13, 2022

Related tags

Deep Learning FusionNet-Pytorch

Overview

FusionNet_Pytorch

FusionNet: A deep fully residual convolutional neural network for image segmentation in connectomics

Requirements

Pytorch 0.1.11
Python 3.5.2
wget

Download code

git clone https://github.com/GunhoChoi/FusionNet_Pytorch
cd FusionNet_Pytorch

Download Map data

wget https://people.eecs.berkeley.edu/~tinghuiz/projects/pix2pix/datasets/maps.tar.gz
tar -xzvf maps.tar.gz

Make model directory

mkdir model

Train Model

python3 main.py  -> medical image without augmentation
python3 main_augmented.py  -> map image with naive augmentation

Out of memory error -> change batch_size / img_size / out_dim

Result

Medical Image

Map Image

Original Image / Label Image / Generated Image

Related Works

FusionNet in Tensorflow by Hyungjoo Andrew Cho

Owner

Choi Gunho

Yonsei Univ. Computer Science and Business Major(2010~2017)

GitHub Repository

competitions-v2

Codabench (formerly Codalab Competitions v2) Installation $ cp .env_sample .env $ docker-compose up -d $ docker-compose exec django ./manage.py migrat

21 Dec 02, 2022

Graph-Refined Convolutional Network for Multimedia Recommendation with Implicit Feedback

Graph-Refined Convolutional Network for Multimedia Recommendation with Implicit Feedback This is our Pytorch implementation for the paper: Yinwei Wei,

17 Jun 10, 2022

Omnidirectional camera calibration in python

Omnidirectional Camera Calibration Key features pure python initial solution based on A Toolbox for Easily Calibrating Omnidirectional Cameras (Davide

12 Nov 22, 2022

An implementation of an abstract algebra for music tones (pitches).

nbdev template Use this template to more easily create your nbdev project. If you are using an older version of this template, and want to upgrade to

0 Oct 10, 2022

PyTorch implementation of SMODICE: Versatile Offline Imitation Learning via State Occupancy Matching

SMODICE: Versatile Offline Imitation Learning via State Occupancy Matching This is the official PyTorch implementation of SMODICE: Versatile Offline I

14 Aug 30, 2022

Unofficial Pytorch Implementation of WaveGrad2

WaveGrad 2 — Unofficial PyTorch Implementation WaveGrad 2: Iterative Refinement for Text-to-Speech Synthesis Unofficial PyTorch+Lightning Implementati

104 Nov 29, 2022

OpenFace – a state-of-the art tool intended for facial landmark detection, head pose estimation, facial action unit recognition, and eye-gaze estimation.

OpenFace 2.2.0: a facial behavior analysis toolkit Over the past few years, there has been an increased interest in automatic facial behavior analysis

5.8k Dec 31, 2022

Flexible Option Learning - NeurIPS 2021

Flexible Option Learning This repository contains code for the paper Flexible Option Learning presented as a Spotlight at NeurIPS 2021. The implementa

7 Nov 09, 2022

Official code for the paper: Deep Graph Matching under Quadratic Constraint (CVPR 2021)

QC-DGM This is the official PyTorch implementation and models for our CVPR 2021 paper: Deep Graph Matching under Quadratic Constraint. It also contain

55 Nov 14, 2022

[ICLR 2021] Rank the Episodes: A Simple Approach for Exploration in Procedurally-Generated Environments.

[ICLR 2021] RAPID: A Simple Approach for Exploration in Reinforcement Learning This is the Tensorflow implementation of ICLR 2021 paper Rank the Episo

48 Nov 21, 2022

MetaDrive: Composing Diverse Scenarios for Generalizable Reinforcement Learning

MetaDrive: Composing Diverse Driving Scenarios for Generalizable RL [ Documentation | Demo Video ] MetaDrive is a driving simulator with the following

276 Jan 04, 2023

Use unsupervised and supervised learning to predict stocks

AIAlpha: Multilayer neural network architecture for stock return prediction This project is meant to be an advanced implementation of stacked neural n

1.5k Dec 26, 2022

AdaDM: Enabling Normalization for Image Super-Resolution

AdaDM AdaDM: Enabling Normalization for Image Super-Resolution. You can apply BN, LN or GN in SR networks with our AdaDM. Pretrained models (EDSR*/RDN

58 Jan 08, 2023

The toolkit to generate auto labeled datasets

Ozeu Ozeu is the toolkit to autolabal dataset for instance segmentation. You can generate datasets labaled with segmentation mask and bounding box fro

28 Mar 28, 2022

This is a Tensorflow implementation of Learning to See in the Dark in CVPR 2018

Learning-to-See-in-the-Dark This is a Tensorflow implementation of Learning to See in the Dark in CVPR 2018, by Chen Chen, Qifeng Chen, Jia Xu, and Vl

5.3k Jan 01, 2023

PyAF is an Open Source Python library for Automatic Time Series Forecasting built on top of popular pydata modules.

PyAF (Python Automatic Forecasting) PyAF is an Open Source Python library for Automatic Forecasting built on top of popular data science python module

405 Jan 02, 2023

Implementation of the paper All Labels Are Not Created Equal: Enhancing Semi-supervision via Label Grouping and Co-training

SemCo The official pytorch implementation of the paper All Labels Are Not Created Equal: Enhancing Semi-supervision via Label Grouping and Co-training

42 Nov 14, 2022

PyContinual (An Easy and Extendible Framework for Continual Learning)

PyContinual (An Easy and Extendible Framework for Continual Learning) Easy to Use You can sumply change the baseline, backbone and task, and then read

176 Jan 05, 2023

BBB streaming without Xorg and Pulseaudio and Chromium and other nonsense (heavily WIP)

BBB Streamer NG? Makes a conference like this... ...streamable like this! I also recorded a small video showing the basic features: https://www.youtub

60 Oct 21, 2022

Codes for TIM2021 paper "Anchor-Based Spatio-Temporal Attention 3-D Convolutional Networks for Dynamic 3-D Point Cloud Sequences"

4 Jul 19, 2022