Kaggle: Cell Instance Segmentation

Overview

Kaggle: Cell Instance Segmentation

CI complete testing Code formatting codecov pre-commit.ci status

The goal of this challenge is to detect cells in microscope images.

Sample brain visual

with simple view on how many cels have been annotated per image:

Sample brain visual

Experimentation

install this tooling

A simple way how to use this basic functions:

! pip install https://github.com/Borda/kaggle_cell-inst-segm/archive/refs/heads/main.zip

run notebooks in Kaggle

local notebooks

  • TBD

some results

Training progress with EfficientNet3D with training for 10 epochs > over 96% validation accuracy:

Training process

Owner
Jirka Borovec
Computer Vision & Machine Learning & Bio-Medical Imaging & DeepLearn
Jirka Borovec
Code for the CVPR 2021 paper "Triple-cooperative Video Shadow Detection"

Triple-cooperative Video Shadow Detection Code and dataset for the CVPR 2021 paper "Triple-cooperative Video Shadow Detection"[arXiv link] [official l

Zhihao Chen 24 Oct 04, 2022
Public Models considered for emotion estimation from EEG

Emotion-EEG Set of models for emotion estimation from EEG. Composed by the combination of two deep-learing models learning together (RNN and CNN) with

Victor Delvigne 21 Dec 23, 2022
Code for "Diversity can be Transferred: Output Diversification for White- and Black-box Attacks"

Output Diversified Sampling (ODS) This is the github repository for the NeurIPS 2020 paper "Diversity can be Transferred: Output Diversification for W

50 Dec 11, 2022
MERLOT: Multimodal Neural Script Knowledge Models

merlot MERLOT: Multimodal Neural Script Knowledge Models MERLOT is a model for learning what we are calling "neural script knowledge" -- representatio

Rowan Zellers 190 Dec 22, 2022
This is the official PyTorch implementation of the CVPR 2020 paper "TransMoMo: Invariance-Driven Unsupervised Video Motion Retargeting".

TransMoMo: Invariance-Driven Unsupervised Video Motion Retargeting Project Page | YouTube | Paper This is the official PyTorch implementation of the C

Zhuoqian Yang 330 Dec 11, 2022
Simple STAC Catalogs discovery tool.

STAC Catalog Discovery Simple STAC discovery tool. Just paste the STAC Catalog link and press Enter. Details STAC Discovery tool enables discovering d

Mykola Kozyr 21 Oct 19, 2022
Code repo for realtime multi-person pose estimation in CVPR'17 (Oral)

Realtime Multi-Person Pose Estimation By Zhe Cao, Tomas Simon, Shih-En Wei, Yaser Sheikh. Introduction Code repo for winning 2016 MSCOCO Keypoints Cha

Zhe Cao 4.9k Dec 31, 2022
An official PyTorch implementation of the TKDE paper "Self-Supervised Graph Representation Learning via Topology Transformations".

Self-Supervised Graph Representation Learning via Topology Transformations This repository is the official PyTorch implementation of the following pap

Hsiang Gao 2 Oct 31, 2022
This repository is based on Ultralytics/yolov5, with adjustments to enable polygon prediction boxes.

Polygon-Yolov5 This repository is based on Ultralytics/yolov5, with adjustments to enable polygon prediction boxes. Section I. Description The codes a

xinzelee 226 Jan 05, 2023
Code for paper: "Spinning Language Models for Propaganda-As-A-Service"

Spinning Language Models for Propaganda-As-A-Service This is the source code for the Arxiv version of the paper. You can use this Google Colab to expl

Eugene Bagdasaryan 16 Jan 03, 2023
RLDS stands for Reinforcement Learning Datasets

RLDS RLDS stands for Reinforcement Learning Datasets and it is an ecosystem of tools to store, retrieve and manipulate episodic data in the context of

Google Research 135 Jan 01, 2023
Few-shot NLP benchmark for unified, rigorous eval

FLEX FLEX is a benchmark and framework for unified, rigorous few-shot NLP evaluation. FLEX enables: First-class NLP support Support for meta-training

AI2 85 Dec 03, 2022
TorchIO is a Medical image preprocessing and augmentation toolkit for deep learning. Part of the PyTorch Ecosystem.

Medical image preprocessing and augmentation toolkit for deep learning. Part of the PyTorch Ecosystem.

Fernando Pérez-García 1.6k Jan 06, 2023
This is implementation of AlexNet(2012) with 3D Convolution on TensorFlow (AlexNet 3D).

AlexNet_3dConv TensorFlow implementation of AlexNet(2012) by Alex Krizhevsky, with 3D convolutiional layers. 3D AlexNet Network with a standart AlexNe

Denis Timonin 41 Jan 16, 2022
Cervix ROI Segmentation Using U-NET

Cervix ROI Segmentation Using U-NET Overview This code illustrate how to segment the ROI in cervical images using U-NET. The ROI here meant to include

Scotty Kwok 35 Sep 14, 2022
This repository contains Prior-RObust Bayesian Optimization (PROBO) as introduced in our paper "Accounting for Gaussian Process Imprecision in Bayesian Optimization"

Prior-RObust Bayesian Optimization (PROBO) Introduction, TOC This repository contains Prior-RObust Bayesian Optimization (PROBO) as introduced in our

Julian Rodemann 2 Mar 19, 2022
No-reference Image Quality Assessment(NIQA) Algorithms (BRISQUE, NIQE, PIQE, RankIQA, MetaIQA)

No-Reference Image Quality Assessment Algorithms No-reference Image Quality Assessment(NIQA) is a task of evaluating an image without a reference imag

Dae-Young Song 26 Jan 04, 2023
Implementation of self-attention mechanisms for general purpose. Focused on computer vision modules. Ongoing repository.

Self-attention building blocks for computer vision applications in PyTorch Implementation of self attention mechanisms for computer vision in PyTorch

AI Summer 962 Dec 23, 2022
Align and Prompt: Video-and-Language Pre-training with Entity Prompts

ALPRO Align and Prompt: Video-and-Language Pre-training with Entity Prompts [Paper] Dongxu Li, Junnan Li, Hongdong Li, Juan Carlos Niebles, Steven C.H

Salesforce 127 Dec 21, 2022
Tracking Progress in Question Answering over Knowledge Graphs

Tracking Progress in Question Answering over Knowledge Graphs Table of contents Question Answering Systems with Descriptions The QA Systems Table cont

Knowledge Graph Question Answering 47 Jan 02, 2023