Apache (Py)Spark type annotations (stub files).

Overview

PySpark Stubs

Build Status PyPI version Conda Forge version

A collection of the Apache Spark stub files. These files were generated by stubgen and manually edited to include accurate type hints.

Tests and configuration files have been originally contributed to the Typeshed project. Please refer to its contributors list and license for details.

Important

This project has been merged with the main Apache Spark repository (SPARK-32714). All further development for Spark 3.1 and onwards will be continued there.

For Spark 2.4 and 3.0, development of this package will be continued, until their official deprecation.

  • If your problem is specific to Spark 2.3 and 3.0 feel free to create an issue or open pull requests here.
  • Otherwise, please check the official Spark JIRA and contributing guidelines. If you create a JIRA ticket or Spark PR related to type hints, please ping me with [~zero323] or @zero323 respectively. Thanks in advance.

Motivation

  • Static error detection (see SPARK-20631)

    SPARK-20631

  • Improved autocompletion.

    Syntax completion

Installation and usage

Please note that the guidelines for distribution of type information is still work in progress (PEP 561 - Distributing and Packaging Type Information). Currently installation script overlays existing Spark installations (pyi stub files are copied next to their py counterparts in the PySpark installation directory). If this approach is not acceptable you can add stub files to the search path manually.

According to PEP 484:

Third-party stub packages can use any location for stub storage. Type checkers should search for them using PYTHONPATH.

Moreover:

Third-party stub packages can use any location for stub storage. Type checkers should search for them using PYTHONPATH. A default fallback directory that is always checked is shared/typehints/python3.5/ (or 3.6, etc.)

Please check usage before proceeding.

The package is available on PYPI:

pip install pyspark-stubs

and conda-forge:

conda install -c conda-forge pyspark-stubs

Depending on your environment you might also need a type checker, like Mypy or Pytype [1], and autocompletion tool, like Jedi.

Editor Type checking Autocompletion Notes
Atom [2] [3] Through plugins.
IPython / Jupyter Notebook [4]  
PyCharm  
PyDev [5] ?  
VIM / Neovim [6] [7] Through plugins.
Visual Studio Code [8] [9] Completion with plugin
Environment independent / other editors [10] [11] Through Mypy and Jedi.

This package is tested against MyPy development branch and in rare cases (primarily important upstrean bugfixes), is not compatible with the preceding MyPy release.

PySpark Version Compatibility

Package versions follow PySpark versions with exception to maintenance releases - i.e. pyspark-stubs==2.3.0 should be compatible with pyspark>=2.3.0,<2.4.0. Maintenance releases (post1, post2, ..., postN) are reserved for internal annotations updates.

API Coverage:

As of release 2.4.0 most of the public API is covered. For details please check API coverage document.

See also

Disclaimer

Apache Spark, Spark, PySpark, Apache, and the Spark logo are trademarks of The Apache Software Foundation. This project is not owned, endorsed, or sponsored by The Apache Software Foundation.

Footnotes

[1] Not supported or tested.
[2] Requires atom-mypy or equivalent.
[3] Requires autocomplete-python-jedi or equivalent.
[4] It is possible to use magics to type check directly in the notebook. In general though, you'll have to export whole notebook to .py file and run type checker on the result.
[5] Requires PyDev 7.0.3 or later.
[6] TODO Using vim-mypy, syntastic or Neomake.
[7] With jedi-vim.
[8] With Mypy linter.
[9] With Python extension for Visual Studio Code.
[10] Just use your favorite checker directly, optionally combined with tool like entr.
[11] See Jedi editor plugins list.
Comments
  • Fix 2-argument math functions

    Fix 2-argument math functions

    Fixes the binary math functions:

    • atan2 and hypot take two arguments, not one
    • pow supports taking a literal numeric value as its second argument in addition to a Column.
    bug 3.0 2.3 2.4 
    opened by harpaj 10
  • Jedi doesn't work with MLReaders

    Jedi doesn't work with MLReaders

    It seems like there is some problem with Jedi compatibility. Some components seem to work pretty well. For example DataFrame without stubs:

    In [1]: import jedi                                                                                                                                                                                                
    
    In [2]: from pyspark.sql import SparkSession                                                                                                                                                                       
    
    In [3]: jedi.Interpreter("SparkSession.builder.getOrCreate().createDataFrame([]).", [globals()]).completions()                                                                                                     
    ---------------------------------------------------------------------------
    AttributeError   
    ...
    AttributeError: 'ModuleContext' object has no attribute 'py__path__'
    

    and with stubs:

    In [1]: from pyspark.sql import SparkSession                                                                                                                                                                       
    
    In [2]: import jedi                                                                                                                                                                                                
    
    In [3]: jedi.Interpreter("SparkSession.builder.getOrCreate().createDataFrame([]).", [globals()]).completions()                                                                                                     
    Out[3]: 
    [<Completion: agg>,
     <Completion: alias>,
     <Completion: approxQuantile>,
     <Completion: cache>,
     <Completion: checkpoint>,
     <Completion: coalesce>,
     <Completion: collect>,
     <Completion: colRegex>,
     <Completion: columns>,
     <Completion: corr>,
     <Completion: count>,
     <Completion: cov>,
    ...
     <Completion: __str__>]
    

    So far so good. However, if take for example LinearRegressionModel.load things don't work so well. Without stubs provides no suggestions

    In [1]: import jedi                                                                                                                                                                                                
    
    In [2]: from pyspark.ml.regression import LinearRegressionModel                                                                                                                                                    
    
    In [3]: jedi.Interpreter("LinearRegressionModel.load('foo').", [globals()]).completions()                                                                                                                          
    Out[3]: []
    

    but one provided with stubs

    In [1]: import jedi                                                                                                                                                                                                
    
    In [2]: from pyspark.ml.regression import LinearRegressionModel                                                                                                                                                    
    
    In [3]: jedi.Interpreter("LinearRegressionModel.load('foo').", [globals()]).completions()                                                                                                                          
    Out[3]: 
    [<Completion: load>,
     <Completion: read>,
     <Completion: __annotations__>,
     <Completion: __class__>,
     <Completion: __delattr__>,
     <Completion: __dict__>,
     <Completion: __dir__>,
     <Completion: __doc__>,
     <Completion: __eq__>,
     <Completion: __format__>,
     <Completion: __getattribute__>,
     <Completion: __hash__>,
     <Completion: __init__>,
     <Completion: __init_subclass__>,
     <Completion: __module__>,
     <Completion: __ne__>,
     <Completion: __new__>,
     <Completion: __reduce__>,
     <Completion: __reduce_ex__>,
     <Completion: __repr__>,
     <Completion: __setattr__>,
     <Completion: __sizeof__>,
     <Completion: __slots__>,
    

    don't make much sense. If model is fitted:

    In [4]: from pyspark.ml.regression import LinearRegression                                                                                                                                                         
    
    In [5]: jedi.Interpreter("LinearRegression().fit(...).", [globals()]).completions()                                                                                                                                
    Out[5]: 
    [<Completion: aggregationDepth>,
     <Completion: append>,
     <Completion: clear>,
     <Completion: coefficients>,
     <Completion: copy>,
     <Completion: count>,
    ....
     <Completion: __str__>]
    

    Model which is explicitly annotated works fine, so it seems like there is something in MLReader or one of the sub-classes that causes a failure.

    We already have data tests for this (as well as some test cases from apache/spark examples, and mypy seems to be fine with this.

    Since LinearRegression.fit works fine (and some toy tests confirm that), Generics are not sufficient to reproduce the problem. So it seems like type parameter is not processed correctly on the path:

    Tested with:

    • jedi==0.15.2 and jedi==0.16.0 (0c56aa4).
    • pyspark-stubs==3.0.0.dev5
    • pyspark==3.0.0.dev0 (afe70b3)
    opened by zero323 7
  • DataFrameReader.load parameters incorrectly expected all to be strings

    DataFrameReader.load parameters incorrectly expected all to be strings

    Using 2.4.0.post6

    spark.read.load(folders, inferSchema=True, header=False)
    

    mypy reports Expected type 'str', got 'bool' instead for both inferSchema and header.

    Looks like the issue is in third_party/3/pyspark/sql/readwriter.pyi Line 23 where in the definition for load() we have **options: str. For csv suppport this needs to be **options: Optional[Union[bool, str, int]] but to handle the general case it probably needs to be **options: Any.

    enhancement 
    opened by ghost 7
  • Added contains to Column

    Added contains to Column

    The contains method is missing from the stubs causing mypy to raise error: "Column" not callable.

    This PR adds the typehints to 2.4 specifically (the version we are using), but it should probably also be added to the other versions.

    opened by Braamling 6
  • #394: Use Union[List[Column], List[str]] for Select

    #394: Use Union[List[Column], List[str]] for Select

    Passing a List[str] to select raises a mypy warning, similar for List[Column]. We change the type from List[Union[Column, str]] to Union[List[Column], List[str]].

    Fixes #394 .

    opened by jhereth 5
  • Update distinct() and repartition() definitions

    Update distinct() and repartition() definitions

    Update repartition functions to allow for Col in numPartitions parameter.

    Reference

    numPartitions – can be an int to specify the target number of partitions or a Column.
        If it is a Column, it will be used as the first partitioning column.
        If not specified, the default number of partitions is used.
    

    Also add stub for DataFrame#distinct()

    opened by zpencerq 5
  • Allow `Column` type for timezone argument in pyspark.sql.functions

    Allow `Column` type for timezone argument in pyspark.sql.functions

    In the functions here: https://github.com/zero323/pyspark-stubs/blob/3c4684a224c1be4eea4577e475f8bb4d045edddd/third_party/3/pyspark/sql/functions.pyi#L100-L101 we currently have tz: str but this can also be specified as a Column

    Example:

    >>> from pyspark.sql import functions
    >>> df = spark.sql("SELECT CAST(0 AS TIMESTAMP) AS timestamp, 'Asia/Tokyo' AS tz")
    >>> df.select(functions.from_utc_timestamp(df.timestamp, df.tz)).collect()
    [Row(from_utc_timestamp(timestamp, tz)=datetime.datetime(1970, 1, 1, 18, 0))]
    

    I think this could be expanded to tz: ColumnOrName?

    3.0 2.4 3.1 
    opened by charlietsai 4
  • Overload DataFrame.drop: sequences must be *str

    Overload DataFrame.drop: sequences must be *str

    The method DataFrame.drop expects either 1 Column, or 1 str, or an iterable of strings. This is only type checked inside the function though.

    Currently the type hints (and the actual API) allow to pass multiple Columns but it does result in a runtime error. Personally, I'd like to have that caught earlier. But as this might be getting too close to the internals of the functions, I’d like to hear your opinion on whether or not the type hints should “look inside” to aid development.

    opened by oliverw1 4
  • provide overloaded methods for sample

    provide overloaded methods for sample

    The fraction is a required argument to the sample method. Anytime someone calls df.sample(.01) this is met in mypy with

    Argument 1 to "sample" of "DataFrame" has incompatible type "float"; expected "Optional[bool]"

    In the Pyspark API, the three arguments are in fact pure keyword arguments that are handled later to ensure fraction must be given. This is probably done to keep consistent with the Scala API.

    By overloading the methods, the issue is resolved.

    opened by oliverw1 4
  • Allow non-string load/save parameters

    Allow non-string load/save parameters

    Resolves #273

    Additional parameters to DataFrameReader.load() and DataFrameWriter.save()/.saveTable() are passed to the file-type specific reader or writer types. These parameters can be of any type.

    opened by mark-oppenheim 4
  • Fix return type for DataFrame.groupBy / cube / rollup

    Fix return type for DataFrame.groupBy / cube / rollup

    2.3 has these data types and I was erroneously gettting errors for them.

    Note this is a port of e2d225f06ff36fcbf79e2123f1c18f380e862728

    I tried a cherry-pick but it had some issues (not sure why)

    opened by dangercrow 4
Releases(3.0.0.post3)
Owner
Maciej
Just a dog on the Internet. I would love to tell you more, but then, of course, I'd have to erase your memory. A30CEF0C31A501EC
Maciej
Firebase + Cloudrun + Machine learning

A simple end to end consumer lending decision engine powered by Google Cloud Platform (firebase hosting and cloudrun)

Emmanuel Ogunwede 8 Aug 16, 2022
Tools for mathematical optimization region

Tools for mathematical optimization region

林景 15 Nov 30, 2022
Bodywork deploys machine learning projects developed in Python, to Kubernetes.

Bodywork deploys machine learning projects developed in Python, to Kubernetes. It helps you to: serve models as microservices execute batch jobs run r

Bodywork Machine Learning 409 Jan 01, 2023
Compare MLOps Platforms. Breakdowns of SageMaker, VertexAI, AzureML, Dataiku, Databricks, h2o, kubeflow, mlflow...

Compare MLOps Platforms. Breakdowns of SageMaker, VertexAI, AzureML, Dataiku, Databricks, h2o, kubeflow, mlflow...

Thoughtworks 318 Jan 02, 2023
Pyomo is an object-oriented algebraic modeling language in Python for structured optimization problems.

Pyomo is a Python-based open-source software package that supports a diverse set of optimization capabilities for formulating and analyzing optimization models. Pyomo can be used to define symbolic p

Pyomo 1.4k Dec 28, 2022
PyHarmonize: Adding harmony lines to recorded melodies in Python

PyHarmonize: Adding harmony lines to recorded melodies in Python About To use this module, the user provides a wav file containing a melody, the key i

Julian Kappler 2 May 20, 2022
A Pythonic framework for threat modeling

pytm: A Pythonic framework for threat modeling Introduction Traditional threat modeling too often comes late to the party, or sometimes not at all. In

Izar Tarandach 644 Dec 20, 2022
Kubeflow is a machine learning (ML) toolkit that is dedicated to making deployments of ML workflows on Kubernetes simple, portable, and scalable.

SDK: Overview of the Kubeflow pipelines service Kubeflow is a machine learning (ML) toolkit that is dedicated to making deployments of ML workflows on

Kubeflow 3.1k Jan 06, 2023
Official code for HH-VAEM

HH-VAEM This repository contains the official Pytorch implementation of the Hierarchical Hamiltonian VAE for Mixed-type Data (HH-VAEM) model and the s

Ignacio Peis 8 Nov 30, 2022
ThunderSVM: A Fast SVM Library on GPUs and CPUs

What's new We have recently released ThunderGBM, a fast GBDT and Random Forest library on GPUs. add scikit-learn interface, see here Overview The miss

Xtra Computing Group 1.4k Dec 22, 2022
A python fast implementation of the famous SVD algorithm popularized by Simon Funk during Netflix Prize

⚡ funk-svd funk-svd is a Python 3 library implementing a fast version of the famous SVD algorithm popularized by Simon Funk during the Neflix Prize co

Geoffrey Bolmier 171 Dec 19, 2022
Transform ML models into a native code with zero dependencies

m2cgen (Model 2 Code Generator) - is a lightweight library which provides an easy way to transpile trained statistical models into a native code

Bayes' Witnesses 2.3k Jan 03, 2023
Home repository for the Regularized Greedy Forest (RGF) library. It includes original implementation from the paper and multithreaded one written in C++, along with various language-specific wrappers.

Regularized Greedy Forest Regularized Greedy Forest (RGF) is a tree ensemble machine learning method described in this paper. RGF can deliver better r

RGF-team 363 Dec 14, 2022
DirectML is a high-performance, hardware-accelerated DirectX 12 library for machine learning.

DirectML is a high-performance, hardware-accelerated DirectX 12 library for machine learning. DirectML provides GPU acceleration for common machine learning tasks across a broad range of supported ha

Microsoft 1.1k Jan 04, 2023
A machine learning web application for binary classification using streamlit

Machine Learning web App This is a machine learning web application for binary classification using streamlit options this application contains 3 clas

abdelhak mokri 1 Dec 20, 2021
CS 7301: Spring 2021 Course on Advanced Topics in Optimization in Machine Learning

CS 7301: Spring 2021 Course on Advanced Topics in Optimization in Machine Learning

Rishabh Iyer 141 Nov 10, 2022
Management of exclusive GPU access for distributed machine learning workloads

TensorHive is an open source tool for managing computing resources used by multiple users across distributed hosts. It focuses on granting

Paweł Rościszewski 131 Dec 12, 2022
Empyrial is a Python-based open-source quantitative investment library dedicated to financial institutions and retail investors

By Investors, For Investors. Want to read this in Chinese? Click here Empyrial is a Python-based open-source quantitative investment library dedicated

Santosh 640 Dec 31, 2022
TIANCHI Purchase Redemption Forecast Challenge

TIANCHI Purchase Redemption Forecast Challenge

Haorui HE 4 Aug 26, 2022
Primitives for machine learning and data science.

An Open Source Project from the Data to AI Lab, at MIT MLPrimitives Pipelines and primitives for machine learning and data science. Documentation: htt

MLBazaar 65 Dec 29, 2022