Exploring the Top ML and DL GitHub Repositories

Overview

Exploring the Top ML and DL GitHub Repositories

This repository contains my work related to my project where I collected data on the most popular machine learning and deep learning GitHub repositories in order to further visualize and analyze it.

I've written a corresponding article about this project, which you can find on Towards Data Science. The article was selected as an "Editors Pick", and was also selected to be in their "Hands on Tutorials" section of their publication.

At a high level, my analysis is as follows:

  1. I collected data on the top machine learning and deep learning repositories and their respective owners from GitHub.
  2. I cleaned and prepared the data.
  3. I visualized what I thought were interesting patterns, trends, and findings within the data, and discuss each visualization in detail within the TDS article above.

Tools used

Python NumPy pandas tqdm PyGitHub GeoPy Altair tqdm wordcloud docopt black

Replicating the Analysis

I've designed the analysis in this repository so that anyone is able to recreate the data collection, cleaning, and visualization steps in a fully automated manner. To do this, open up a terminal and follow the steps below:

Step 1: Clone this repository to your computer

# clone the repo
git clone https://github.com/nicovandenhooff/top-repo-analysis.git

# change working directory to the repos root directory
cd top-repo-analysis

Step 2: Create and activate the required virtual environment

# create the environment
conda env create -f environment.yaml

# activate the environment
conda activate top-repo-analysis

Step 3: Obtain a GitHub personal access token ("PAT") and add it to the credentials file

Please see how to obtain a PAT here.

Once you have it perform the following:

# open the credentials file
open src/credentials.json

This will open the credentials json file which contains the following:

" }">
{
"github_token": "
   
    "
   
}

Change to your PAT.

Step 4: Run the following command to delete the current data and visualizations in the repository

make clean

Step 5: Run the following command to recreate the analysis

make all

Please note that if you are recreating the analysis:

  • The last step will take several hours to run (approximately 6-8 hours) as the data collection process from GitHub has to sleep to respect the GitHub API rate limit. The total number of API requests for the data collection will approximately be between 20,000 to 30,000.
  • When the data cleaning script data_cleaning.py runs, there make be some errors may be printed to the screen by GeoPy if the Noinatim geolocation service is unable to find a valid location for a GitHub user. This will not cause the script to terminate, and is just ugly in the terminal. Unfortunately you cannot suppress these error messages, so just ignore them if they occur.
  • Getting the location data with GeoPy in the data cleaning script also takes about 30 minutes as the Nominatim geolocation service limits 1 API request per second.
  • I ran this analysis on December 30, 2021 and as such collected the data from GitHub on this date. If you run this analysis in the future, the data you collect will inherently be slightly different if the machine learning and deep learning repositories with the highest number of stars has changed since the date when I ran the analysis. This will slightly change how the resulting visualizations look.

Using the Scraper to Collect New Data

You can also use the scraping script in isolation to collect new data from GitHub if you desire.

If you'd like to do this, all you'll need to do is open up a terminal, follow steps 1 to 3 above, and then perform the following:

Step a) Run the scraping script with your desired options as follows

python src/github_scraper.py --queries=<queries> --path=<path>
  • Replace with your desired queries. Note that if you desire multiple search queries, enclose them in "" separate them by a single comma with NO SPACE after the comma. For example "Machine Learning,Deep Learning"
  • Replace with the output path that you want the scraped data to be saved at.

Please see the documentation in the header of the scraping script for additional options that are available.

Step b) Run the data cleaning script to clean your newly scraped data

python src/data_cleaning.py --input_path=<path> --output_path=<output_path>
  • Replace with the path that you saved the scraped data at.
  • Replace with the output path that you want the cleaned data to be saved at.
  • As metioned in the last section, some errors may be printed to the terminal by GeoPy during the data cleaning process, but feel free to ignore these as they do not affect the execution of the script.

Dependencies

Please see the environment file for a full list of dependencies.

License

The source code for the site is licensed under the MIT license.

You might also like...
Spectacular AI SDK fuses data from cameras and IMU sensors and outputs an accurate 6-degree-of-freedom pose of a device.
Spectacular AI SDK fuses data from cameras and IMU sensors and outputs an accurate 6-degree-of-freedom pose of a device.

Spectacular AI SDK examples Spectacular AI SDK fuses data from cameras and IMU sensors (accelerometer and gyroscope) and outputs an accurate 6-degree-

Working Time Statistics of working hours and working conditions by industry and company

Working Time Statistics of working hours and working conditions by industry and company

A python package which can be pip installed to perform statistics and visualize binomial and gaussian distributions of the dataset

GBiStat package A python package to assist programmers with data analysis. This package could be used to plot : Binomial Distribution of the dataset p

ToeholdTools is a Python package and desktop app designed to facilitate analyzing and designing toehold switches, created as part of the 2021 iGEM competition.

ToeholdTools Category Status Repository Package Build Quality A library for the analysis of toehold switch riboregulators created by the iGEM team Cit

A collection of robust and fast processing tools for parsing and analyzing web archive data.

ChatNoir Resiliparse A collection of robust and fast processing tools for parsing and analyzing web archive data. Resiliparse is part of the ChatNoir

Python beta calculator that retrieves stock and market data and provides linear regressions.

Stock and Index Beta Calculator Python script that calculates the beta (β) of a stock against the chosen index. The script retrieves the data and resa

Larch: Applications and Python Library for Data Analysis of X-ray Absorption Spectroscopy (XAS, XANES, XAFS, EXAFS), X-ray Fluorescence (XRF) Spectroscopy and Imaging

Larch: Data Analysis Tools for X-ray Spectroscopy and More Documentation: http://xraypy.github.io/xraylarch Code: http://github.com/xraypy/xraylarch L

A real-time financial data streaming pipeline and visualization platform using Apache Kafka, Cassandra, and Bokeh.
A real-time financial data streaming pipeline and visualization platform using Apache Kafka, Cassandra, and Bokeh.

Realtime Financial Market Data Visualization and Analysis Introduction This repo shows my project about real-time stock data pipeline. All the code is

Python script to automate the plotting and analysis of percentage depth dose and dose profile simulations in TOPAS.

topas-create-graphs A script to automatically plot the results of a topas simulation Works for percentage depth dose (pdd) and dose profiles (dp). Dep

Releases(v1.0.0)
Owner
Nico Van den Hooff
UBC Master of Data Science 2022
Nico Van den Hooff
Statistical & Probabilistic Analysis of Store Sales, University Survey, & Manufacturing data

Statistical_Modelling Statistical & Probabilistic Analysis of Store Sales, University Survey, & Manufacturing data Statistical Methods for Decision Ma

Avnika Mehta 1 Jan 27, 2022
Udacity-api-reporting-pipeline - Udacity api reporting pipeline

udacity-api-reporting-pipeline In this exercise, you'll use portions of each of

Fabio Barbazza 1 Feb 15, 2022
A project consists in a set of assignements corresponding to a BI process: data integration, construction of an OLAP cube, qurying of a OPLAP cube and reporting.

TennisBusinessIntelligenceProject - A project consists in a set of assignements corresponding to a BI process: data integration, construction of an OLAP cube, qurying of a OPLAP cube and reporting.

carlo paladino 1 Jan 02, 2022
A fast, flexible, and performant feature selection package for python.

linselect A fast, flexible, and performant feature selection package for python. Package in a nutshell It's built on stepwise linear regression When p

88 Dec 06, 2022
NumPy and Pandas interface to Big Data

Blaze translates a subset of modified NumPy and Pandas-like syntax to databases and other computing systems. Blaze allows Python users a familiar inte

Blaze 3.1k Jan 05, 2023
CS50 pset9: Using flask API to create a web application to exchange stocks' shares.

C$50 Finance In this guide we want to implement a website via which users can “register”, “login” “buy” and “sell” stocks, like below: Background If y

1 Jan 24, 2022
DaCe is a parallel programming framework that takes code in Python/NumPy and other programming languages

aCe - Data-Centric Parallel Programming Decoupling domain science from performance optimization. DaCe is a parallel programming framework that takes c

SPCL 330 Dec 30, 2022
PyClustering is a Python, C++ data mining library.

pyclustering is a Python, C++ data mining library (clustering algorithm, oscillatory networks, neural networks). The library provides Python and C++ implementations (C++ pyclustering library) of each

Andrei Novikov 1k Jan 05, 2023
Get mutations in cluster by querying from LAPIS API

Cluster Mutation Script Get mutations appearing within user-defined clusters. Usage Clusters are defined in the clusters dict in main.py: clusters = {

neherlab 1 Oct 22, 2021
A lightweight interface for reading in output from the Weather Research and Forecasting (WRF) model into xarray Dataset

xwrf A lightweight interface for reading in output from the Weather Research and Forecasting (WRF) model into xarray Dataset. The primary objective of

National Center for Atmospheric Research 43 Nov 29, 2022
OpenDrift is a software for modeling the trajectories and fate of objects or substances drifting in the ocean, or even in the atmosphere.

opendrift OpenDrift is a software for modeling the trajectories and fate of objects or substances drifting in the ocean, or even in the atmosphere. Do

OpenDrift 167 Dec 13, 2022
Tools for analyzing data collected with a custom unity-based VR for insects.

unityvr Tools for analyzing data collected with a custom unity-based VR for insects. Organization: The unityvr package contains the following submodul

Hannah Haberkern 1 Dec 14, 2022
follow-analyzer helps GitHub users analyze their following and followers relationship

follow-analyzer follow-analyzer helps GitHub users analyze their following and followers relationship by providing a report in html format which conta

Yin-Chiuan Chen 2 May 02, 2022
Demonstrate a Dataflow pipeline that saves data from an API into BigQuery table

Overview dataflow-mvp provides a basic example pipeline that pulls data from an API and writes it to a BigQuery table using GCP's Dataflow (i.e., Apac

Chris Carbonell 1 Dec 03, 2021
WAL enables programmable waveform analysis.

This repro introcudes the Waveform Analysis Language (WAL). The initial paper on WAL will appear at ASPDAC'22 and can be downloaded here: https://www.

Institute for Complex Systems (ICS), Johannes Kepler University Linz 40 Dec 13, 2022
This creates a ohlc timeseries from downloaded CSV files from NSE India website and makes a SQLite database for your research.

NSE-timeseries-form-CSV-file-creator-and-SQL-appender- This creates a ohlc timeseries from downloaded CSV files from National Stock Exchange India (NS

PILLAI, Amal 1 Oct 02, 2022
Fancy data functions that will make your life as a data scientist easier.

WhiteBox Utilities Toolkit: Tools to make your life easier Fancy data functions that will make your life as a data scientist easier. Installing To ins

WhiteBox 3 Oct 03, 2022
💬 Python scripts to parse Messenger, Hangouts, WhatsApp and Telegram chat logs into DataFrames.

Chatistics Python 3 scripts to convert chat logs from various messaging platforms into Pandas DataFrames. Can also generate histograms and word clouds

Florian 893 Jan 02, 2023
Data pipelines built with polars

valves Warning: the project is very much work in progress. Valves is a collection of functions for your data .pipe()-lines. This project aimes to host

14 Jan 03, 2023
MDAnalysis is a Python library to analyze molecular dynamics simulations.

MDAnalysis Repository README [*] MDAnalysis is a Python library for the analysis of computer simulations of many-body systems at the molecular scale,

MDAnalysis 933 Dec 28, 2022