A minimal Python package that produces slice plots through h5m DAGMC geometry files

Related tags

Data Visualizationdagmc_geometry_slice_plotter
Overview

A minimal Python package that produces slice plots through h5m DAGMC geometry files

Installation

pip install dagmc_geometry_slice_plotter

Python API Usage

These examples assume you have a h5m file called dagmc.h5m in the same folder that the Python script is being run from.

Create a plot of a slice through the geometry perpendicular to the Z axis and default settings elsewhere. This will slice through the the center of the geometry as plane_origin has not been specified.

from dagmc_geometry_slice_plotter import plot_slice_of_dagmc_geometry

plot = plot_slice_of_dagmc_geometry(
    dagmc_file_or_trimesh_object='dagmc.h5m',
    plane_normal=[0, 0, 1],
)

plot.show()

dagmc slice plot

Create a plot of a slice through the geometry perpendicular to the Z axis, offset by 200cm and with default settings elsewhere.

from dagmc_geometry_slice_plotter import plot_slice_of_dagmc_geometry

plot = plot_slice_of_dagmc_geometry(
    dagmc_file_or_trimesh_object='dagmc.h5m',
    plane_origin=[0, 0, 200],
    plane_normal=[0, 0, 1],
)

plot.show()

dagmc slice plot

Create a plot of a slice through the geometry perpendicular to the Y axis, with a rotation of 45 degrees and with default settings elsewhere. Also saves the plot with a high resolution (DPI)

from dagmc_geometry_slice_plotter import plot_slice_of_dagmc_geometry

plot = plot_slice_of_dagmc_geometry(
    dagmc_file_or_trimesh_object='dagmc.h5m',
    plane_normal=[0, 1, 0],
    rotate_plot=45,
)

plot.savefig('my_plot3.png', dpi=600)

dagmc slice plot

Saves a png image of a plot of a slice through the geometry perpendicular to the X axis and with default settings elsewhere.

from dagmc_geometry_slice_plotter import plot_slice_of_dagmc_geometry

plot_slice_of_dagmc_geometry(
    dagmc_file_or_trimesh_object='dagmc.h5m',
    plane_normal = [1, 0, 0],
    rotate_plot=270,
    output_filename='my_plot4.png'
)

dagmc slice plot

Related packages

This package is used by the regular_mesh_plotter Python package to combine slice plots with regular mesh tally results and produce images like below.

paramak plot openmc regular mesh tally

paramak plot openmc regular mesh tally

Comments
  • Some funky PyQT errors?

    Some funky PyQT errors?

    Pip installed and got the following error;

    ~/.local/lib/python3.10/site-packages/IPython/external/qt_loaders.py in load_qt(api_options)
    370         return result
    371     else:
--> 372         raise ImportError("""
    373     Could not load requested Qt binding. Please ensure that
    374     PyQt4 >= 4.7, PyQt5, PySide >= 1.0.3 or PySide2 is available,

ImportError: 
    Could not load requested Qt binding. Please ensure that
    PyQt4 >= 4.7, PyQt5, PySide >= 1.0.3 or PySide2 is available,
    and only one is imported per session.

    Currently-imported Qt library:                              'pyqt5'
    PyQt4 available (requires QtCore, QtGui, QtSvg):            False
    PyQt5 available (requires QtCore, QtGui, QtSvg, QtWidgets): False
    PySide >= 1.0.3 installed:                                  False
    PySide2 installed:                                          True
    Tried to load:

    But, I do have pyqt5 & PySide2 installed

    opened by makeclean 1
  • added single function that works for file or object

    added single function that works for file or object

    Adds a function called plot_slice_of_dagmc_geometry that can accept either a dagmc file name or a trimesh object and then produce a plot.

    This provides a single entry function for users

    opened by shimwell 1
  • adopted latest py packaging approach

    adopted latest py packaging approach

    A while back I updated this package from a setup.py to use a setup.cfg and a pyproject.toml.

    It is now possible to do everything in the pyproject.toml so this PR updates the packages

    opened by shimwell 0
  • remove internal plotting methods

    remove internal plotting methods

    returning the mplt object and then using the mplt savefig() method offers more flexibility then the built in function offers.

    We can remove the internal function and reduce the code base a bit while maintaining the same functionalilty

    opened by shimwell 0
  • adding ability to make animation

    adding ability to make animation

    It would be handy if the slicer can make an animation

    Perhaps it could accept a tuple for some of these inputs of plane_origin, plane_normal, rotate_plot and then make an animation that sweeps between the inputs.

    A nice tutorial on mpl animations can be found here https://brushingupscience.com/2016/06/21/matplotlib-animations-the-easy-way/

    opened by shimwell 0
  • setuptools_scm is required in setup.cfg

    setuptools_scm is required in setup.cfg

    I might have done something incorrect with the setup.cfg / pyprogject.toml as it appears necessary to add setuptools_scm to the setup.cfg file.

    Without this package the CI fails https://github.com/fusion-energy/dagmc_geometry_slice_plotter/runs/5336107961?check_suite_focus=true

    With the package the CI passes https://github.com/fusion-energy/dagmc_geometry_slice_plotter/runs/5336124187?check_suite_focus=true

    I tested the removal of this package in this PR https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/14

    I'm just not sure why it setuptools_scm is needed as this is not the case for other packages I've translated to setup.cfg

    opened by shimwell 0
Releases(0.2.1)

  • 0.2.1(Dec 13, 2022)

    What's Changed

    • added axis labels by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/28

    Full Changelog: https://github.com/fusion-energy/dagmc_geometry_slice_plotter/compare/0.2.0...0.2.1

    Source code(tar.gz)
    Source code(zip)

  • 0.2.0(Dec 2, 2022)

    What's Changed

    • removed unused script by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/25
    • moved to src project layout by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/26
    • refactoring to allow axis aligned plots by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/27

    Full Changelog: https://github.com/fusion-energy/dagmc_geometry_slice_plotter/compare/0.1.3...0.2.0

    Source code(tar.gz)
    Source code(zip)

  • 0.1.3(Sep 29, 2022)

    What's Changed

    • removed packages that are installed by pyproject by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/22
    • added build back by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/23
    • added missing run cmd by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/24

    Full Changelog: https://github.com/fusion-energy/dagmc_geometry_slice_plotter/compare/0.1.2...0.1.3

    Source code(tar.gz)
    Source code(zip)

  • 0.1.2(Sep 29, 2022)

    What's Changed

    • adopted latest py packaging approach by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/20
    • updating package production by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/21

    Full Changelog: https://github.com/fusion-energy/dagmc_geometry_slice_plotter/compare/0.1.1...0.1.2

    Source code(tar.gz)
    Source code(zip)

  • 0.1.1(Mar 7, 2022)

    What's Changed

    • fixed typo in package name by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/19

    Full Changelog: https://github.com/fusion-energy/dagmc_geometry_slice_plotter/compare/0.1.0...0.1.1

    Source code(tar.gz)
    Source code(zip)

  • 0.1.0(Feb 25, 2022)

    What's Changed

    • updated to setup.cfg by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/13
    • Added more python versions to the testing by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/14
    • removed output filename option by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/18

    Full Changelog: https://github.com/fusion-energy/dagmc_geometry_slice_plotter/compare/v0.0.5...0.1.0

    Source code(tar.gz)
    Source code(zip)
Owner
Fusion Energy
A collection of software projects related to fusion energy
Fusion Energy
GitHub Repository
Extract and visualize information from Gurobi log files

GRBlogtools Extract information from Gurobi log files and generate pandas DataFrames or Excel worksheets for further processing. Also includes a wrapp

Gurobi Optimization 56 Nov 17, 2022
WhatsApp Chat Analyzer is a WebApp and it can be used by anyone to analyze their chat. 😄

WhatsApp-Chat-Analyzer You can view the working project here. WhatsApp chat Analyzer is a WebApp where anyone either tech or non-tech person can analy

Prem Chandra Singh 26 Nov 02, 2022
Tidy data structures, summaries, and visualisations for missing data

naniar naniar provides principled, tidy ways to summarise, visualise, and manipulate missing data with minimal deviations from the workflows in ggplot

Nicholas Tierney 611 Dec 22, 2022
A Python-based non-fungible token (NFT) generator built using Samilla and Matplotlib

PyNFT A Pythonic NF (non-fungible token) generator built using Samilla and Matplotlib Use python pynft.py [amount] The intention behind this generato

Ayush Gundawar 6 Feb 07, 2022
Displaying plot of death rates from past years in Poland. Data source from these years is in readme

Average-Death-Rate Displaying plot of death rates from past years in Poland The goal collect the data from a CSV file count the ADR (Average Death Rat

Oliwier SzymaƄski 0 Sep 12, 2021
LabGraph is a a Python-first framework used to build sophisticated research systems with real-time streaming, graph API, and parallelism.

LabGraph is a a Python-first framework used to build sophisticated research systems with real-time streaming, graph API, and parallelism.

MLH Fellowship 7 Oct 05, 2022
A Scheil-Gulliver simulation tool using pycalphad.

scheil A Scheil-Gulliver simulation tool using pycalphad. import matplotlib.pyplot as plt from pycalphad import Database, variables as v from scheil i

pycalphad 6 Dec 10, 2021
Schema validation just got Pythonic

Schema validation just got Pythonic schema is a library for validating Python data structures, such as those obtained from config-files, forms, extern

Vladimir Keleshev 2.7k Jan 06, 2023
Parse Robinhood 1099 Tax Document from PDF into CSV

Robinhood 1099 Parser This project converts Robinhood Securities 1099 tax document from PDF to CSV file. This tool will be helpful for those who need

Keun Tae (Kevin) Park 52 Jun 10, 2022
Pydrawer: The Python package for visualizing curves and linear transformations in a super simple way

pydrawer 📐 The Python package for visualizing curves and linear transformations in a super simple way. ✏ Installation Install pydrawer package with

Dylan Tintenfich 56 Dec 30, 2022
Flipper Zero documentation repo

Flipper Zero Docs Participation To fix a bug or add something new to this repository, you need to open a pull-request. Also, on every page of the site

Flipper Zero (All Repositories will be public soon) 114 Dec 30, 2022
simple tool to paint axis x and y

simple tool to paint axis x and y

G705 1 Oct 21, 2021
demir.ai Dataset Operations

demir.ai Dataset Operations With this application, you can have the empty values (nan/null) deleted or filled before giving your dataset to machine le

Ahmet Furkan DEMIR 8 Nov 01, 2022
Python library that makes it easy for data scientists to create charts.

Chartify Chartify is a Python library that makes it easy for data scientists to create charts. Why use Chartify? Consistent input data format: Spend l

Spotify 3.2k Jan 01, 2023
Movie recommendation using RASA, TigerGraph

Demo run: The below video will highlight the runtime of this setup and some sample real-time conversations using the power of RASA + TigerGraph, Steps

Sudha Vijayakumar 3 Sep 10, 2022
DrawBot lets you draw images taken from the internet on Skribbl.io, Gartic Phone and Paint

DrawBot You don't speak french? No worries, english translation is over here. C'est quoi ? DrawBot est un logiciel codé par V2F qui va prendre possess

V2F 205 Jan 01, 2023
GD-UltraHack - A Mod Menu for Geometry Dash. Specifically a MegahackV5 clone in Python. Only for Windows

GD UltraHack: The Mod Menu that Nobody asked for. This is a mod menu for the gam

zeo 1 Jan 05, 2022
Python package to visualize and cluster partial dependence.

partial_dependence A python library for plotting partial dependence patterns of machine learning classifiers. The technique is a black box approach to

NYU Visualization Lab 25 Nov 14, 2022
Flexitext is a Python library that makes it easier to draw text with multiple styles in Matplotlib

Flexitext is a Python library that makes it easier to draw text with multiple styles in Matplotlib

TomĂĄs Capretto 93 Dec 28, 2022
Generate a 3D Skyline in STL format and a OpenSCAD file from Gitlab contributions

Your Gitlab's contributions in a 3D Skyline gitlab-skyline is a Python command to generate a skyline figure from Gitlab contributions as Github did at

FĂ©lix GĂłmez 70 Dec 22, 2022