Interfaces between napari and pymeshlab library to allow import, export and construction of surfaces.

Overview

napari-pymeshlab

License PyPI Python Version tests codecov napari hub

Interfaces between napari and the pymeshlab library to allow import, export and construction of surfaces.

This is a WIP and feature requests are welcome. Please check PyMeshLab for possible features

Feature list


Installation

You can install napari-pymeshlab via pip:

pip install napari-pymeshlab

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the MIT license, "napari-pymeshlab" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.

You might also like...
Blender addon, import and update mixamo animation

This is a blender addon for import and update mixamo animations.

 YBlade - Import QBlade blades into Fusion 360
YBlade - Import QBlade blades into Fusion 360

YBlade - Import QBlade blades into Fusion 360 Simple script for Fusion 360 that takes QBlade blade description and constructs the blade: Usage First,

Why write code when you can import it directly from GitHub Copilot?

Copilot Importer Why write code when you can import it directly from GitHub Copilot? What is Copilot Importer? The copilot python module will dynamica

Blender addon to import images as meshes
Blender addon to import images as meshes

ImagesAsMesh Blender addon to import images as meshes. Inspired by: ImagesAsPlanes Installation It's like just about every other Blender addon. Downlo

Import Apex legends mprt files exported from Legion
Import Apex legends mprt files exported from Legion

Apex-mprt-importer-for-Blender Import Apex legends mprt files exported from Legion. REQUIRES CAST IMPORTER Usage: Use a VPK extracter to extract the m

Voldemort's Python import helper

importmagician Voldemort's Python import helper pip install importmagician Import from uninstalled Python directories Say you have a directory (relat

It is convenient to quickly import Python packages from the network.

It is convenient to quickly import Python packages from the network.

Import some key/value data to Prometheus custom-built Node Exporter in Python
Import some key/value data to Prometheus custom-built Node Exporter in Python

About the app In one particilar project, i had to import some key/value data to Prometheus. So i have decided to create my custom-built Node Exporter

A python package for batch import of resume attachments to be parsed in HrFlow.

HrFlow Importer Description A python package for batch import of resume attachments to be parsed in HrFlow. hrflow-importer is an open-source project

Comments
  • Calling the reader

    Calling the reader

    First of all, thanks for the plugin.

    I have an obj surface that I want to import and visualize in napari, however, I tried:

    from napari_pymeshlab import get_mesh_reader
    surface = ("E:/3D-Edited.obj")
    viewer.add_surface(get_mesh_reader(surface), name='surface')
    

    But I got the following error:

    ---------------------------------------------------------------------------
    TypeError                                 Traceback (most recent call last)
    Input In [3], in <module>
    ----> 1 viewer.add_surface(get_mesh_reader(surface), name='surface')
    
    File ~\.conda\envs\bio11\lib\site-packages\napari\components\viewer_model.py:4, in add_surface(self, data, colormap, contrast_limits, gamma, name, metadata, scale, translate, rotate, shear, affine, opacity, blending, shading, visible, cache, experimental_clipping_planes, wireframe, normals)
          1 from __future__ import annotations
          3 import inspect
    ----> 4 import itertools
          5 import os
          6 import warnings
    
    File ~\.conda\envs\bio11\lib\site-packages\napari\layers\surface\surface.py:169, in Surface.__init__(self, data, colormap, contrast_limits, gamma, name, metadata, scale, translate, rotate, shear, affine, opacity, blending, shading, visible, cache, experimental_clipping_planes, wireframe, normals)
        145 def __init__(
        146     self,
        147     data,
       (...)
        166     normals=None,
        167 ):
    --> 169     ndim = data[0].shape[1]
        171     super().__init__(
        172         data,
        173         ndim,
       (...)
        185         experimental_clipping_planes=experimental_clipping_planes,
        186     )
        188     self.events.add(
        189         interpolation=Event,
        190         rendering=Event,
        191         shading=Event,
        192     )
    
    TypeError: 'function' object is not subscriptable
    C:\Users\Linux\.conda\envs\bio11\lib\site-packages\ipykernel\kernelbase.py:674: RuntimeWarning: coroutine 'InProcessKernel._abort_queues' was never awaited!`
    

    I know is a newbie question.

    Thanks in advance for your help.

    opened by EdwinHernandezG 5
  • Add functions for smoothing surfaces and measuring Gaussian curvature

    Add functions for smoothing surfaces and measuring Gaussian curvature

    Hi Zach @zacsimile ,

    I'm just sending a PR with some functionality. I had developed it in another plugin, but not published. I think these functions would fit well here.

    • convex_hull
    • laplacian_smooth
    • taubin_smooth
    • simplification_clustering_decimation
    • colorize_curvature_apss

    Furthermore, I'm suggesting to change the license of your plugin to GPL, because pymeshlab is licensed GPL. So we kind of have to use GPL as well. :-/ https://github.com/cnr-isti-vclab/PyMeshLab/blob/master/LICENSE

    Please let me know what you think!

    Best, Robert

    opened by haesleinhuepf 4
  • napari-hub website lacks documentation

    napari-hub website lacks documentation

    Hi @zacsimile ,

    the napari-hub page of the plugin lacks documentation. If you delete .napari/description.md and push an update to pypi, then the readme.md will be shown.

    If you're busy, I'm happy to send a PR :-)

    Best, Robert

    opened by haesleinhuepf 3
  • fix link to screenshot

    fix link to screenshot

    Hi @zacsimile ,

    this should fix the broken link to the image on the napari hub. It's always good if the screenshots are visible ;-)

    closes #3

    Also for fixing this, a deployment to pypi is necessary.

    Thanks! Robert

    opened by haesleinhuepf 0
Releases(v0.0.5)
Owner
Zach Marin
Zach Marin
It converts ING BANK account historic into a csv file you can import in HomeBank application.

ing2homebank It converts your ING Bank account historic csv file into another csv file you can import in HomeBank application

1 Feb 14, 2022
this is a basic python project that I made using python

this is a basic python project that I made using python. This project is only for practice because my python skills are still newbie.

Elvira Firmansyah 2 Dec 14, 2022
pybicyclewheel calulates the required spoke length for bicycle wheels

pybicyclewheel pybicyclewheel calulates the required spoke length for bicycle wheels. (under construcion) - homepage further readings wikipedia bicyc

karl 0 Aug 24, 2022
Генератор отчетов на Python с использованием библиотеки docx для работы с word-файлами и запросов к сервису

Генератор отчетов на Python с использованием библиотеки docx для работы с word-файлами и запросов к сервису

Semyon Esaev 2 Jun 24, 2022
Addon to give a keybind to automatically enable contact shadows on all lights in a scene

3-2-1 Contact(Shadow) An easy way to let you enable contact shadows on all your lights, because Blender doesn't enable it by default, and doesn't give

TDV Alinsa 3 Feb 02, 2022
A repository of study materials related to Think Python 2nd Edition by Allen B. Downey. More information about the book can be found here: https://greenteapress.com/wp/think-python-2e/

Intro-To-Python This content is based on the book Think Python 2nd Edition by Allen B. Downey. More information about the book can be found here: http

Brent Eskridge 63 Jan 07, 2023
Check if Python package names are available on PyPI.

😻 isavailable Can I haz this Python package on PyPI? Check if Python package names are available on PyPI. Usage $ isavailable checks whether your des

Felipe S. S. Schneider 3 May 18, 2022
Push Prometheus metrics to VictoriaMetrics or other exporters

Push metrics from your periodic long-running jobs to existing Prometheus/VictoriaMetrics monitoring system.

olegm 14 Nov 04, 2022
Run unpatched binaries on Nix/NixOS

Run unpatched binaries on Nix/NixOS

Thiago Kenji Okada 160 Jan 08, 2023
A Microsoft reward automator, designed to work headless on a raspberry pi

MsReward A Microsoft reward automator, designed to work headless on a raspberry pi. Tested with a pi 3b+ and a pi 4 2Gb . Using a discord bot to log e

10 Dec 21, 2022
A silly RPG(Not MMO) made in python

Project_PyMMo A silly RPG(Not MMO) made in python, FOR WINDOWS 10 ONLY! Hello tester, to install pymmo follow the steps bellow: 1.First install python

0 Feb 08, 2022
Ontario-Covid-Screening - An automated Covid-19 School Screening Tool for Ontario

Ontario-Covid19-Screening An automated Covid-19 School Screening Tool for Ontari

Rayan K 0 Feb 20, 2022
Python plugin/extra to load data files from an external source (such as AWS S3) to a local directory

Data Loader Plugin - Python Table of Content (ToC) Data Loader Plugin - Python Table of Content (ToC) Overview References Python module Python virtual

Cloud Helpers 2 Jan 10, 2022
✔️ Create to-do lists to easily manage your ideas and work.

Todo List + Add task + Remove task + List completed task + List not completed task + Set clock task time + View task statistics by date Changelog v 1.

Abbas Ataei 30 Nov 28, 2022
A service to display a quick summary of a project on GitHub.

A service to display a quick summary of a project on GitHub. Usage 📖 Paste the code below with details filled in as specified below into your Readme.

Rohit V 8 Dec 06, 2022
TikTok Auto Claimer Made By Aim low!#9999 Leaked By bazooka#0001

Zues Auto Claimer Leaked By bazooka#0001 put proxies in prox.txt put ssid in sid.txt put all users you want to target in user.txt for the login just t

1 Jan 14, 2022
Airbrake Python

airbrake-python Note. Python 3.4+ are advised to use new Airbrake Python notifier which supports async API and code hunks. Python 2.7 users should con

Airbrake 51 Dec 22, 2022
A fishing bot script written in Python!

A fishing bot script written in Python!

Anel Drocic 3 Nov 03, 2021
Your missing PO formatter and linter

pofmt Your missing PO formatter and linter Features Wrap msgid and msgstr with a constant max width. Can act as a pre-commit hook. Display lint errors

Frost Ming 5 Mar 22, 2022
a url shortener with fastapi and tortoise-orm

fastapi-tortoise-orm-url-shortener a url shortener with fastapi and tortoise-orm

19 Aug 12, 2022