Interfaces between napari and pymeshlab library to allow import, export and construction of surfaces.

Related tags

Miscellaneousnapari-pymeshlab
Overview

napari-pymeshlab

License PyPI Python Version tests codecov napari hub

Interfaces between napari and the pymeshlab library to allow import, export and construction of surfaces.

This is a WIP and feature requests are welcome. Please check PyMeshLab for possible features

Feature list

Installation

You can install napari-pymeshlab via pip:

pip install napari-pymeshlab

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the MIT license, "napari-pymeshlab" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.

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Comments
  • Calling the reader

    Calling the reader

    First of all, thanks for the plugin.

    I have an obj surface that I want to import and visualize in napari, however, I tried:

    from napari_pymeshlab import get_mesh_reader
surface = ("E:/3D-Edited.obj")
viewer.add_surface(get_mesh_reader(surface), name='surface')

    But I got the following error:

    ---------------------------------------------------------------------------
TypeError                                 Traceback (most recent call last)
Input In [3], in <module>
----> 1 viewer.add_surface(get_mesh_reader(surface), name='surface')

File ~\.conda\envs\bio11\lib\site-packages\napari\components\viewer_model.py:4, in add_surface(self, data, colormap, contrast_limits, gamma, name, metadata, scale, translate, rotate, shear, affine, opacity, blending, shading, visible, cache, experimental_clipping_planes, wireframe, normals)
      1 from __future__ import annotations
      3 import inspect
----> 4 import itertools
      5 import os
      6 import warnings

File ~\.conda\envs\bio11\lib\site-packages\napari\layers\surface\surface.py:169, in Surface.__init__(self, data, colormap, contrast_limits, gamma, name, metadata, scale, translate, rotate, shear, affine, opacity, blending, shading, visible, cache, experimental_clipping_planes, wireframe, normals)
    145 def __init__(
    146     self,
    147     data,
   (...)
    166     normals=None,
    167 ):
--> 169     ndim = data[0].shape[1]
    171     super().__init__(
    172         data,
    173         ndim,
   (...)
    185         experimental_clipping_planes=experimental_clipping_planes,
    186     )
    188     self.events.add(
    189         interpolation=Event,
    190         rendering=Event,
    191         shading=Event,
    192     )

TypeError: 'function' object is not subscriptable
C:\Users\Linux\.conda\envs\bio11\lib\site-packages\ipykernel\kernelbase.py:674: RuntimeWarning: coroutine 'InProcessKernel._abort_queues' was never awaited!`

    I know is a newbie question.

    Thanks in advance for your help.

    opened by EdwinHernandezG 5
  • Add functions for smoothing surfaces and measuring Gaussian curvature

    Add functions for smoothing surfaces and measuring Gaussian curvature

    Hi Zach @zacsimile ,

    I'm just sending a PR with some functionality. I had developed it in another plugin, but not published. I think these functions would fit well here.

    • convex_hull
    • laplacian_smooth
    • taubin_smooth
    • simplification_clustering_decimation
    • colorize_curvature_apss

    Furthermore, I'm suggesting to change the license of your plugin to GPL, because pymeshlab is licensed GPL. So we kind of have to use GPL as well. :-/ https://github.com/cnr-isti-vclab/PyMeshLab/blob/master/LICENSE

    Please let me know what you think!

    Best, Robert

    opened by haesleinhuepf 4
  • napari-hub website lacks documentation

    napari-hub website lacks documentation

    Hi @zacsimile ,

    the napari-hub page of the plugin lacks documentation. If you delete .napari/description.md and push an update to pypi, then the readme.md will be shown.

    If you're busy, I'm happy to send a PR :-)

    Best, Robert

    opened by haesleinhuepf 3
  • fix link to screenshot

    fix link to screenshot

    Hi @zacsimile ,

    this should fix the broken link to the image on the napari hub. It's always good if the screenshots are visible ;-)

    closes #3

    Also for fixing this, a deployment to pypi is necessary.

    Thanks! Robert

    opened by haesleinhuepf 0
Releases(v0.0.5)
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Zach Marin
Zach Marin
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