Trio Assembly Snakemake Workflow

Overview

Trio Assembly Snakemake Workflow

Input

  • HiFi reads for child in bam format
  • Either HiFi or short reads for parents in either bam or cram format

Directory structure within basedir

.
├── cluster_logs
├── reads
│   ├── HG002
│   │   └── hifi
│   ├── HG003
│   │   ├── hifi
│   │   └── paired_end
│   ├── HG004
│   │   ├── hifi
│   │   └── paired_end
├── results
│   ├── HG002
│   │   ├── fasta
│   │   ├── hifiasm
│   │   ├── logs
│   │   └── yak
│   └── HG002_sr
│       ├── fasta
│       ├── hifiasm
│       ├── logs
│       └── yak
└── workflow_trio_assembly
    ├── calN50
    └── rules
        └── envs
Owner
Juniper A. Lake
Bioinformatics Scientist
Juniper A. Lake
Playing memory game is fun and the more harder it is the more challenging it is.

Playing memory game is fun and the more harder it is the more challenging it is. Playing thi sgame make us stress free and also happy. So, I have decided to make a memory Game which people can play w

Shreejan Dolai 3 Nov 11, 2022
TwoDMaker (2DMaker) - Simple engine for 2D games making!

TwoDMaker (2DMaker) - Simple engine for 2D games making! Create simple games (or ui) in one hour! About. This is a simple engine for game or gui app c

Ivan Perzhinsky. 1 Jan 03, 2022
Pong is one of the first computer games that ever created, this simple

Pong-Game Pong is one of the first computer games that ever created, this simple "tennis like" game features two paddles and a ball, the goal is to de

Lateefah Ajadi 0 Jan 15, 2022
Arcade-like space shooter game written entirely in python

E.T.-Attack Arcade-like space shooter game written entirely in python Project description A space shooter game - inspired by the legendary game Space

Sven Eschlbeck 2 Dec 17, 2022
Games: Create interesting games by pure python.

Create interesting games by pure python.

4.2k Jan 06, 2023
A Python Sudoku Game Made with Pygame.

A Python Sudoku Game Made with Pygame. A Begginer Aimed at Learning Git, This Game Uses a Puzzle Generator Made by RutledgePaulV, Link to his Repo:

helaxious 3 Jun 29, 2022
Vac-Man in Python

Vac-Man in Python This is my personal version of Vax-man game using python, which is the first task of EA Software Engineering Virtual Experience Prog

ZiXiang Luo 3 Jan 05, 2022
An implementation of John Conway's Game of Life.

This is an implementation of John Conway's Game of Life in Python, and a very basic and straightforward one at that.

Mae 3 Feb 11, 2022
A programme which basically has the same function as the actual Rock paper scissors game.

A programme which basically has the same function as the actual Rock paper scissors game.

1 Feb 11, 2022
Python Interactive Mini Games

Python Interactive Mini Games Mini projects from Coursera's An Introduction to I

Ashish Choudhary 1 Jan 16, 2022
A fun, casual and strategic game made using Python!

Steve's Pixels A fun, casual and strategic game made using Python! Prerequisites See requirements.txt Demo video demo.mp4 Usage python -m steves_pixel

Jaivardhan Bhola 9 Sep 17, 2022
You can play TicTacToe with the engine running UI.py with python3

TicTacToe An "Engine" for TicTacToe You can play TicTacToe with the engine running UI.py with python3. The file engine.py is designed so you can make

Ahnaf Syndeed 3 Feb 20, 2022
We tried to recreate this classic game using python physics libraries.

We tried to recreate this classic game using python physics libraries. The result is certainly hilarious but enjoyable. One of my very first physics application.

Delwys Glokpor 2 Dec 12, 2021
You want to uto-update your private minecraft client? Give this to developer and enjoy!

minecraft-hack-installer You want to uto-update your private minecraft client? Give this to developer and enjoy! Steps to do: Install libraries: pip i

EuropeStudio 1 Jun 03, 2022
A DDQN that learned to play tic tac toe by playing against itself

TicTacToeAI A DDQN that learned to play tic tac toe by playing against itself Cu

Anik Patel 3 Apr 09, 2022
PyChess - a chess client for Linux/Windows

PyChess - a free chess client for Linux/Windows The mission of PyChess is to create a free, pleasant, PyGObject based chess game for the Linux desktop

559 Dec 28, 2022
Simple car game written in PyGame

Welcome to CarGame 👋 Car Game written in PyGame! NOTE: This is still new and there may be stuff broken... 🏠 Homepage Install install pygame by typin

John 1 Oct 29, 2021
pygame is a Free and Open Source python programming language library for making multimedia applications like games built on top of the excellent SDL library. C, Python, Native, OpenGL.

pygame is a Free and Open Source python programming language library for making multimedia applications like games built on top of the excellent SDL library. C, Python, Native, OpenGL.

pygame 5.6k Jan 01, 2023
Utility.py - a utility that offerres cool cli tools and games.

Utilty.py Utility.py is a utility that offerres cool cli tools and games. Currently the offerd games/items are: get the number, countdown, random name

bee-micizi 1 Dec 08, 2021
A use of the python MCPI to enhance the multiplayer and singleplayer gameplay.

Morpheus 2.0 A use of the python MCPI to enhance the multiplayer and singleplayer gameplay. To Use: You will need to install the keyboard, pysimplegui

11 Oct 11, 2022