GPU-accelerated image processing using cupy and CUDA

Overview

napari-cupy-image-processing

License PyPI Python Version tests codecov

GPU-accelerated image processing using cupy and CUDA

img.png


This napari plugin was generated with Cookiecutter using with @napari's cookiecutter-napari-plugin template.

Installation

Follow the instructions for installing cupy on your computer first. Afterwards, you can install napari-cupy-image-processing via pip:

pip install napari-cupy-image-processing

A more detailed example for installation (change 10.2 to your CUDA version):

conda create --name cupy_p38 python=3.8
conda activate cupy_p38
conda install -c conda-forge cupy cudatoolkit=10.2
conda install napari
pip install napari-cupy-image-processing

Known issues

When executing the first operation right after CUDA installation, napari may freeze and crash. Wait a minute and try again.

Contributing

Contributions are very welcome. Adding cupy ndimage functions is quite easy as you can see in the implementation of the current operations. If you need another function in napari, just send a PR. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the MIT license, "napari-cupy-image-processing" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.

You might also like...
A small Python module for BMP image processing.

micropython-microbmp A small Python module for BMP image processing. It supports BMP image of 1/2/4/8/24-bit colour depth. Loading supports compressio

Image Processing HighPass Filter With Python
Image Processing HighPass Filter With Python

Image_Processing_HighPassFilter High Pass Filter take the high frequency and ignore the low frequency High Pass Filter can be use to sharpening an ima

Using P5.js, Processing and Python to create generative art
Using P5.js, Processing and Python to create generative art

Experiments in Generative Art Using Python, Processing, and P5.js Quick Links Daily Sketches March 2021. | Gallery | Repo | Done using P5.js Genuary 2

Simple Python package to convert an image into a quantized image using a customizable palette
Simple Python package to convert an image into a quantized image using a customizable palette

Simple Python package to convert an image into a quantized image using a customizable palette. Resulting image can be displayed by ePaper displays such as Waveshare displays.

Seaborn-image is a Python image visualization library based on matplotlib and provides a high-level API to draw attractive and informative images quickly and effectively.
Seaborn-image is a Python image visualization library based on matplotlib and provides a high-level API to draw attractive and informative images quickly and effectively.

seaborn-image: image data visualization Description Seaborn-image is a Python image visualization library based on matplotlib and provides a high-leve

kikuchipy is an open-source Python library for processing and analysis of electron backscatter diffraction (EBSD) patterns
kikuchipy is an open-source Python library for processing and analysis of electron backscatter diffraction (EBSD) patterns

kikuchipy is an open-source Python library for processing and analysis of electron backscatter diffraction (EBSD) patterns. The library builds on the

An executor that performs standard pre-processing and normalization on images.

An executor that performs standard pre-processing and normalization on images.

Pixel Brush Processing Unit
Pixel Brush Processing Unit

Pixel Brush Processing Unit The Pixel Brush Processing Unit (PBPU for short) is a simple 4-Bit CPU I designed in Logisim while I was still in school a

Easily turn large sets of image urls to an image dataset. Can download, resize and package 100M urls in 20h on one machine.
Easily turn large sets of image urls to an image dataset. Can download, resize and package 100M urls in 20h on one machine.

img2dataset Easily turn large sets of image urls to an image dataset. Can download, resize and package 100M urls in 20h on one machine. Also supports

Releases(0.3.1)
  • 0.3.1(Aug 27, 2022)

  • 0.3.0(Jul 10, 2022)

    New features

    • Added docstrings to enable searching in them via the napari-assistant

    Backwards compatibility breaking changes:

    • The unused viewer parameter of all functions was removed.

    Deprecated methods:

    • The measurement() function has been deprecated because it was too slow and it will be removed with the next major release. Consider using napari-skimage-regionprops or napari-simpleitk-image-processing instead.
    Source code(tar.gz)
    Source code(zip)
  • 0.2.3(May 8, 2022)

    Deprecated functions

    • napari_cupy_image_processing.measurement() has been deprecated. Use napari_simpleitk_image_processing.label_statistics() instead.
    Source code(tar.gz)
    Source code(zip)
  • 0.2.2(Mar 20, 2022)

  • 0.2.1(Mar 20, 2022)

  • 0.2.0(Mar 8, 2022)

    Bugfix:

    • measurements() was not easily callable from the API (Thanks to Edwin Hernandez G for reporting!)

    Backwards compatibility breaking changes:

    • measurements() now takes images (numpy arrays) as parameters, and no longer napari layers.
    Source code(tar.gz)
    Source code(zip)
  • 0.1.9(Jan 1, 2022)

  • 0.1.8(Dec 12, 2021)

  • 0.1.7(Dec 4, 2021)

    Backwards compatibible changes

    • Changed menu entries to cover finer differentiation between various filtering and segmentation techniquese
    Source code(tar.gz)
    Source code(zip)
  • 0.1.6(Nov 28, 2021)

  • 0.1.5(Nov 12, 2021)

  • 0.1.4(Nov 9, 2021)

  • 0.1.2(Oct 28, 2021)

  • 0.1.1(Oct 22, 2021)

  • 0.1.0(Oct 22, 2021)

    New functions

    • gaussian_filter
    • gaussian_laplace
    • median_filter
    • percentile_filter
    • white_tophat
    • morphological_gradient
    • morphological_laplace
    • wiener
    • threshold_otsu
    • binary_fill_holes
    • label
    Source code(tar.gz)
    Source code(zip)
Owner
Robert Haase
Computational Microscopist, BioImage Analyst, Code Jockey
Robert Haase
MaryJane is a simple MJPEG server written in Python.

MaryJane is a simple MJPEG server written in Python.

bootrino 152 Dec 13, 2022
A drop-in replacement for django's ImageField that provides a flexible, intuitive and easily-extensible interface for quickly creating new images from the one assigned to the field.

django-versatileimagefield A drop-in replacement for django's ImageField that provides a flexible, intuitive and easily-extensible interface for creat

Jonathan Ellenberger 490 Dec 13, 2022
An automated Comic Book downloader (cbr/cbz) for use with SABnzbd, NZBGet and torrents

Mylar Note that feature development has stopped as we have moved to Mylar3. EOL for this project is the end of 2020 and will no longer be supported. T

979 Dec 13, 2022
Kimimaro: Skeletonize Densely Labeled Images

Kimimaro: Skeletonize Densely Labeled Images # Produce SWC files from volumetric images. kimimaro forge labels.npy --progress # writes to ./kimimaro_o

92 Dec 17, 2022
An example which streams RGB-D images over spout.

Spout RGB-D Example An example which streams RGB-D images over spout with visiongraph. Due to the spout dependency this currently only works on Window

Florian Bruggisser 4 Nov 14, 2022
A QR Code encode and decode python module

A QR Code encode and decode python module

Fayas Noushad 4 Feb 10, 2022
A Toolbox for Image Feature Matching and Evaluations

This is a toolbox repository to help evaluate various methods that perform image matching from a pair of images.

Qunjie Zhou 342 Dec 29, 2022
TRREASURE_IMAGE is python lib by which you can hide anything in a .jpg image with Command-Line Interface[cli] feature

TRREASURE_IMAGE TRREASURE_IMAGE is a python third-party library with Command-Line Interface[cli] feature. Table of Contents General Info Python librar

Fatin Shadab 3 Jun 07, 2022
Remove Background from Image With Python

Install Library pypi $ pip3 install xremovebg

krypton 4 May 26, 2022
Png-to-stl - Converts PNG and text to SVG, and then extrudes that based on parameters

have ansible installed locally run ansible-playbook setup_application.yml this sets up directories, installs system packages, and sets up python envir

1 Jan 03, 2022
Easily turn large sets of image urls to an image dataset. Can download, resize and package 100M urls in 20h on one machine.

img2dataset Easily turn large sets of image urls to an image dataset. Can download, resize and package 100M urls in 20h on one machine. Also supports

Romain Beaumont 1.4k Jan 01, 2023
ImageStrike是一款用于CTF中图片隐写的综合利用工具

🎈 简介 ImageStrike是一款使用PyQT5开发,用于CTF中图片隐写的综合利用工具

zR00t1 133 Dec 27, 2022
Pnuemonia Normal detection by using XRay images.

Pnuemonia Normal detection by using XRay images. Got image datas from kaggle(link is given in sources.txt file) also normal xray images from other site (also link is given) in order to avoid data dis

Zarina 1 Feb 28, 2022
Generate your own QR Code and scan it to see the results! Never use it for malicious purposes.

QR-Code-Generator-Python Choose the name of your generated QR .png file. If it happens to open the .py file (the application), there are specific comm

1 Dec 23, 2021
MetaStalk is a tool that can be used to generate graphs from the metadata of JPEG, TIFF, and HEIC images

MetaStalk About MetaStalk is a tool that can be used to generate graphs from the metadata of JPEG, TIFF, and HEIC images, which are tested. More forma

Cyb3r Jak3 1 Jul 05, 2021
Draw a torus passing through three given points.

PyTorusThreePoints Draw a torus passing through three given points. Usage import numpy as np import pyvista as pv from torus_three_points.main import

2 Nov 19, 2021
Create a static HTML/CSS image gallery from a bunch of images.

gallerize Create a static HTML/CSS image gallery from a bunch of images.

Jochen Kupperschmidt 19 Aug 21, 2022
Generate meme GIFs in which an image you choose can be viewed by the user only after they wait a whole hour.

Generate meme GIFs in which an image you choose can be viewed by the user only after they wait a whole hour.

Feliks Maak 1 Jan 31, 2022
Me cleaner - Tool for partial deblobbing of Intel ME/TXE firmware images

me_cleaner me_cleaner is a Python script able to modify an Intel ME firmware image with the final purpose of reducing its ability to interact with the

Nicola Corna 4.1k Jan 08, 2023
imgAnalyser - Un script pour obtenir la liste des pixels d'une image correspondant à plusieurs couleurs

imgAnalyser - Un script pour obtenir la liste des pixels d'une image correspondant à plusieurs couleurs Ce script à pour but, à partir d'une image, de

Théo Migeat 1 Nov 15, 2021