Napari 3D Ortho Viewer - an ortho viewer for napari for 3D images

Overview

napari-3d-ortho-viewer

License PyPI Python Version tests codecov napari hub

Napari 3D Ortho Viewer - an ortho viewer for napari for 3D images


This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.

This plugin is heavily inspired by ortho-view-napari.

Check out this post on image.sc (https://forum.image.sc/t/napari-visualization-in-3-planes/57768) for more infos about multiview support in napari.

This viewer has some additional features:

  • double click to jump to specific position in all slices
  • additional 3d view of 3d stack with lines or planes indicating current position

Installation

You can install napari-3d-ortho-viewer via pip:

pip install napari-3d-ortho-viewer

To install latest development version :

pip install git+https://github.com/gatoniel/napari-3d-ortho-viewer.git

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the MIT license, "napari-3d-ortho-viewer" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.

Owner
niklas netter
I started studies in physics at Philipps University Marburg in April 2016. Currently I am working at Drescher Lab in the field of image analysis and biophysics.
niklas netter
Gbs-image-colorizer - A tool to convert colorful pictures to GB Studio-compatible colorized backgrounds.

GB Studio Image Colorizer A tool to convert colorful pictures to GB Studio-compatible colorized backgrounds. Made by NalaFala/Yousurname/Y0UR-U5ERNAME

Yousurname 8 Dec 08, 2022
A little Python tool to convert a TrueType (ttf/otf) font into a PNG for use in demos.

font2png A little Python tool to convert a TrueType (ttf/otf) font into a PNG for use in demos. To use from command line it expects python3 to be at /

Rich Elmes 3 Dec 22, 2021
Typesheet is a tiny Python script for creating transparent PNG spritesheets from TrueType (.ttf) fonts.

typesheet typesheet is a tiny Python script for creating transparent PNG spritesheets from TrueType (.ttf) fonts. I made it because I couldn't find an

Grayson Chao 12 Dec 23, 2022
image-processing exercises.

image_processing Assignment 21 Checkered Board Create a chess table using numpy and opencv. view: Color Correction Reverse black and white colors with

Benyamin Zojaji 25 Dec 15, 2022
Herramienta Para Snipear Nitros Y Participar En Sorteos Automaticamente

Crips Nitro Sniper Discord Nitro Sniper Y Auto Participar En Sorteos ⚠️ Es Bastante Rapido Y Efectivo Hecho En Python Como Usar ( Python ) : python -m

1 Oct 27, 2021
Make GIFs from time-stacked xarray.DataArrays (time, [optional band], y, x), dead-simple.

GeoGIF Make GIFs from time-stacked xarray.DataArrays (time, [optional band], y, x), dead-simple. from geogif import gif, dgif gif(data_array) dgif(das

Gabe Joseph 47 Dec 22, 2022
A not exist person image generator python module

A not exist person image generator python module

Fayas Noushad 2 Dec 03, 2021
An python script to convert images to upscaled versions made out of one-colour emojis.

ABOUT This is an python script to convert png, jpg and gif(output isnt animated :( ) images to scaled versions made out of one-colour emojis. Please n

0 Oct 19, 2022
Collection of SVG diagrams about how UTF-8 works

Diagrams Repository of diagrams made for articles on my blog. All diagrams are created using diagrams.net. UTF-8 Licenses Copyright 2022 Seth Michael

Seth Michael Larson 24 Aug 13, 2022
Multi-view 3D reconstruction using neural rendering. Unofficial implementation of UNISURF, VolSDF, NeuS and more.

Multi-view 3D reconstruction using neural rendering. Unofficial implementation of UNISURF, VolSDF, NeuS and more.

Jianfei Guo 683 Jan 04, 2023
Optimize/Compress images using python

Image Optimization Using Python steps to run the script run the command to install the required libraries pip install -r requirements.txt create a dir

Shekhar Gupta 1 Oct 15, 2021
Create a 2D mesh for an airfoil in GMSH using python.

GMSHFoil A simple class to create a 2D mesh for an airfoil in GMSH using python. Requirements pip install airfoils

Charilaos Mylonas 1 May 16, 2022
An example which streams RGB-D images over spout.

Spout RGB-D Example An example which streams RGB-D images over spout with visiongraph. Due to the spout dependency this currently only works on Window

Florian Bruggisser 4 Nov 14, 2022
QR Code Generator

In this project, we'll be using some libraries to instantly generate authentic QR Codes and export them in various formats

Hassan Shahzad 3 Jun 02, 2022
python app to turn a photograph into a cartoon

Draw This. Draw This is a polaroid camera that draws cartoons. You point, and shoot - and out pops a cartoon; the camera's best interpretation of what

Dan Macnish 2k Dec 19, 2022
pix2tex: Using a ViT to convert images of equations into LaTeX code.

The goal of this project is to create a learning based system that takes an image of a math formula and returns corresponding LaTeX code.

Lukas Blecher 2.6k Dec 30, 2022
Random collage/montage generator with drop-shadow

Random Collage Example Usage These are the sample input files in $PWD for the below examples: 1.png 2.png 3.png 4.png 5.png 6.png 7.png 8.png 9.png 10

M B 1 Dec 07, 2021
Simple program to easily view Euler parameters in 3D.

Simple program to easily view Euler parameters in 3D.

5 Aug 20, 2021
Generate different types of random avatars.

avatar-generator Generate different types of random avatars. Requirements Python3 pytorch=1.6 cv2=3.4 tqdm 1. Github-like avatars python generate_gi

Ming 11 Apr 02, 2022